Detail information of GWHGAAZE002233


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009357088.10PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Pyrus x bretschneideri]
Swissprottr|Q9LR69|PPR8_ARATH0Pentatricopeptide repeat-containing protein At1g03540
trEMBLtr|M5XE21|M5XE21_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ17335.1} (Fragment)
TAIR10AT1G03540.10Pentatricopeptide repeat (PPR-like) superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7344005173441919+
GWHAAZE00000001mRNA7344005173441919+
GWHAAZE00000001exon7344005173441919+
GWHAAZE00000001CDS7344005173441919+
Transcript Sequence

Network for GWHGAAZE002233

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.7PPR_21221701.20E-11
PF01535.21PPR1982210.99
PF13041.7PPR_22232711.10E-08
PF01535.21PPR3003260.057
PF01535.21PPR3283551.50E-05
PF01535.21PPR3984230.96
PF01535.21PPR4254531.00E-07
PF01535.21PPR4975190.018
PF01535.21PPR5635920.38
PF04981.14NMD3132428.90E-70
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07562NMD3 RNA transport map03013
Ribosome biogenesis in eukaryotesmap03008

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.748
SRR3591706second leaf0.720
SRR3591707mature leaf0.636
SRR3591708Shoot apex3.236
SRR3591709Stem0.954
SRR3591710White floral bud1.138
SRR3591711White flower1.277
SRR3591712Green floral bud1.493
SRR3591713Yellow flower0.446
SRP173429 SRR8316895Juvenile bud stage 1.202
SRR8316896Juvenile bud stage 2.183
SRR8316897Juvenile bud stage 0.779
SRR8316894Third green stage 0.868
SRR8316900Third green stage 3.182
SRR8316901Third green stage 2.589
SRR8316898Complete white stage 0.680
SRR8316899Complete white stage 4.081
SRR8316903Complete white stage 1.528
SRR8316902Silver flowering stage0.696
SRR8316904Silver flowering stage0.758
SRR8316905Silver flowering stage0.314
SRR8316906Gold flowering stage 0.572
SRR8316907Gold flowering stage 0.760
SRR8316908Gold flowering stage 0.610
SRP132670SRR6706286Control2.526
SRR6706287Light intensity 50%2.692
SRR6706288Light intensity 20%2.599
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.642
CNS0095593Slightly white alabastrum(diploid) 21.082
CNS0095594Slightly white alabastrum(diploid) 31.083
CNS0095595Whole white alabastrum(diploid) 21.204
CNS0095596Whole white alabastrum(diploid) 30.884
CNS0095597Whole white alabastrum(diploid) 40.985
CNS0095598Silvery flower (diploied) 11.615
CNS0095599Silvery flower (diploied) 21.107
CNS0095600Silvery flower (diploied) 32.139
CNS0095601Golden flower (diploid) 11.503
CNS0095602Golden flower (diploid) 21.634
CNS0095603Golden flower (diploid) 32.039
CNS0095604Slightly white alabastrum(tetraploid) 12.429
CNS0095605Slightly white alabastrum(tetraploid) 21.870
CNS0095606Slightly white alabastrum(tetraploid) 34.129
CNS0095607Whole white alabastrum(tetraploid) 10.740
CNS0095608Whole white alabastrum(tetraploid) 20.493
CNS0095609Whole white alabastrum(tetraploid) 33.331
CNS0095610Silvery flower (tetraploid) 12.298
CNS0095611Silvery flower (tetraploid) 22.296
CNS0095612Silvery flower (tetraploid) 32.501
CNS0095613Golden flower (tetraploid) 10.577
CNS0095614Golden flower (tetraploid) 21.247
CNS0095615Golden flower (tetraploid) 30.567
CRA001975CRR073297Stem 13.782
CRR073298Stem 23.764
CRR073299Stem 32.507
CRR073300Leaf 13.753
CRR073301Leaf 23.601
CRR073302Leaf 32.381
CRR073303Juvenile bud 12.818
CRR073304Juvenile bud 21.792
CRR073305Juvenile bud 32.862
CRR073306Third green 10.245
CRR073307Third green 20.146
CRR073308Third green 30.334
CRR073309Second white 10.007
CRR073310Second white 20.433
CRR073311Second white 30.124
CRR073312Silver flowering 10.025
CRR073313Silver flowering 20.053
CRR073314Silver flowering 30.373
CRR073315Gold flowering 12.447
CRR073316Gold flowering 21.793
CRR073317Gold flowering 31.279
CRR073318Tawny withering 12.246
CRR073319Tawny withering 21.996
CRR073320Tawny withering 31.555