Gene detail

Detail information of GWHGAAZE002242

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008448220.1	0	PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial [Cucumis melo]
COG	YP_003585910.1	2E-40	NADH dehydrogenase
Swissprot	tr\|F4JJJ3\|NDB3_ARATH	0	External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial (Precursor)
trEMBL	tr\|E5GBQ4\|E5GBQ4_CUCME	0	NADH dehydrogenase {ECO:0000313\|EMBL:ADN33896.1}
TAIR10	AT4G21490.1	0	NAD(P)H dehydrogenase B3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	73577941	73583096	+
GWHAAZE00000001	mRNA	73577941	73583096	+
GWHAAZE00000001	exon	73577941	73577951	+
GWHAAZE00000001	exon	73578009	73578291	+
GWHAAZE00000001	exon	73578424	73578630	+
GWHAAZE00000001	exon	73579172	73579422	+
GWHAAZE00000001	exon	73580038	73580257	+
GWHAAZE00000001	exon	73580499	73580568	+
GWHAAZE00000001	exon	73580892	73581148	+
GWHAAZE00000001	exon	73581251	73581322	+
GWHAAZE00000001	exon	73581399	73581499	+
GWHAAZE00000001	exon	73581987	73582106	+
GWHAAZE00000001	exon	73582795	73583096	+
GWHAAZE00000001	CDS	73577941	73577951	+
GWHAAZE00000001	CDS	73578009	73578291	+
GWHAAZE00000001	CDS	73578424	73578630	+
GWHAAZE00000001	CDS	73579172	73579422	+
GWHAAZE00000001	CDS	73580038	73580257	+
GWHAAZE00000001	CDS	73580499	73580568	+
GWHAAZE00000001	CDS	73580892	73581148	+
GWHAAZE00000001	CDS	73581251	73581322	+
GWHAAZE00000001	CDS	73581399	73581499	+
GWHAAZE00000001	CDS	73581987	73582106	+
GWHAAZE00000001	CDS	73582795	73582882	+
GWHAAZE00000001	three_prime_UTR	73582883	73583096	+

Transcript Sequence
>GWHTAAZE002246 ATGGATGGATGTGGTGGAGGACTAGGAGGACTAGCGGCTTATTCTGATGCAAGACCTTTCCGCTCAGTGTATGCTGATGCAGCTCAACCTGATATCAAGAAAAAGAAGGTGGTTGTACTTGGAACTGGTTGGGCTGGCACAAGCTTTCTAAAAAATTTGAAAGATCCCTCGTATGAGGTTCATGTGGTGTCCCCTCGTAATTATTTTGCATTTACCCCTTTGTTACCAAGTGTTACATGTGGCACAGTTGAAGCACGTAGCATAGTTGAACCAGTTCGCAATATTGTCAAGAAGAAAGGTTTAGAAGTTCAATTCAGGGAAGCTGAGTGTTTCAAGATCGATCCAGATAAAAAGACAGTCCATTGTCGTTCGAGTCAAGATACTAATTTGGGTGGGAAAGAAGAATTCACGGTGGATTATGACTATCTAGTGATAGCCATGGGAGCCCGTTCAAATACATTTAACACTCCAGGAGTTGTTGAGAATGCCCACTTCTTGAAGGAAGTAGACGATGCTTTGAGAATACGGAGGACTGTAGTCGATTGTTTCGAAAGGGCAAGCCTTCCCAGTCTAAGTGAAGAGGAGAGGAAGAGAATTCTTCATTTTGTAGTTGTCGGAGGTGGTCCAACAGGTGTGGAGTTCGCAGCAGAGCTCCATGACTTTGTGCACGAAGACCTTGGCAAGTTATATCCCGCCCTTAAAGACCATGTCAAGATAACACTTCTTGAGGCAGCAGATCATATATTGAACATGTTTGACAAAAGAATTACAGCTTTTGCTGAAGATAAATTCTCGAGAGATGGAATCAATCTGAAAACGGGATCAATGGTTGTAAAAGTGTCTGACAAGGAAATATCAACCAAAGAACGAAGCACAGGCGAAACTAAAAATATACCTTATGGCATGGTTGTCTGGTCAACTGGTATAGGGACACGCCCTGTTGTTATGGATTTTATGAAGCAAATTGGTCAGGGTAATAGGCGAGTTTTAGCAACTGATGAATGGCTTCGGGTGGAAGGACACAAGAGCATATATGCTCTAGATATTGCAGCAATATTTAGTAAAGCAGACAATAACAAAACTGGTACCTTAAACGTGGAAGACTTCAAAGAAGTCATTAACGATATCTGTGAAAGGTATCCTCAAGTGGAGCTGCATCTGAAGAAGCAGCGTTTGAGAAATTTTGTTGATTTACTGAGTTCTGGGGAGGATGCCAAGAAGGAAATAGATATTGAAAGGTTCAAAACTGCTCTCGAACAGGTTGATTCCCAGTTCAAAAATCTTCCTGCCACCGCACAGGTAGCTGCTCAACAAGGGAGTACCTCGCCGGCTGCTTCAATCGCATGGAGGAGTGCAGTCAGAATCCTGAAGAATAGAATCTCGCATTGTAACATCAAGAAGGGAAATTATGTGGCAAGAATCTTTAGTATTCTCTTATTTATTATGTATTTCCGCTATGTGGGCAAAATACGGTATAAGCATTTTGGCCAATTTGCTCCATTGGGTGGAGAACAAACCGCTGCACAACTTCCTGGAGACTGGGTTTCAATTGGTCATAGCACTCAGTGGCTCTGGTATTCTGTTTATGCAAGCAAGCTAGTGAGCTGGCGAACAAGGATGTGCGTGATAGGGGACTGGTCAAGGCGCTTCATTTTCGGAAGGGACTCGAGTCGTATCTAAGAGCGCAACGAGAGAATGGGTATTTCATCAAATTTTGCCACGGTTCTCAACCAATTTTGTTCCGTTATATGAACAGCAAACAAAAAATTAATTTTGTTTTCTATTTGGTGTTTAAACAATATACAATCAGTTACTGTCTTACCATTAACATGTTTTTTTATTATTTGTATTTGGATATTAATTTTCAGTTCATATATTACTCTCGCTAGTAATA

Network for GWHGAAZE002242

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07992.15	Pyr_redox_2	35	347	7.60E-59
PF01704.19	UDPGP	14	264	1.10E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00972	UAP1	Metabolic pathways	map01100
K00972	UAP1	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0005509	molecular_function	calcium ion binding
GO:0070569	molecular_function	uridylyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.391
	SRR3591706	second leaf	0.182
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.460
	SRR3591709	Stem	0.436
	SRR3591710	White floral bud	10.867
	SRR3591711	White flower	0.421
	SRR3591712	Green floral bud	83.999
	SRR3591713	Yellow flower	0.126
SRP173429	SRR8316895	Juvenile bud stage	7.442
	SRR8316896	Juvenile bud stage	42.882
	SRR8316897	Juvenile bud stage	26.252
	SRR8316894	Third green stage	24.224
	SRR8316900	Third green stage	89.853
	SRR8316901	Third green stage	91.511
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.362
	SRR8316903	Complete white stage	0.046
	SRR8316902	Silver flowering stage	0.059
	SRR8316904	Silver flowering stage	0.084
	SRR8316905	Silver flowering stage	0.090
	SRR8316906	Gold flowering stage	0.054
	SRR8316907	Gold flowering stage	0.059
	SRR8316908	Gold flowering stage	0.148
SRP132670	SRR6706286	Control	28.695
	SRR6706287	Light intensity 50%	28.196
	SRR6706288	Light intensity 20%	25.606
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.804
	CNS0095593	Slightly white alabastrum(diploid) 2	30.674
	CNS0095594	Slightly white alabastrum(diploid) 3	49.296
	CNS0095595	Whole white alabastrum(diploid) 2	61.225
	CNS0095596	Whole white alabastrum(diploid) 3	74.042
	CNS0095597	Whole white alabastrum(diploid) 4	57.029
	CNS0095598	Silvery flower (diploied) 1	0.127
	CNS0095599	Silvery flower (diploied) 2	0.402
	CNS0095600	Silvery flower (diploied) 3	0.158
	CNS0095601	Golden flower (diploid) 1	0.094
	CNS0095602	Golden flower (diploid) 2	0.219
	CNS0095603	Golden flower (diploid) 3	0.110
	CNS0095604	Slightly white alabastrum(tetraploid) 1	84.482
	CNS0095605	Slightly white alabastrum(tetraploid) 2	71.832
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.084
	CNS0095607	Whole white alabastrum(tetraploid) 1	100.863
	CNS0095608	Whole white alabastrum(tetraploid) 2	111.410
	CNS0095609	Whole white alabastrum(tetraploid) 3	104.193
	CNS0095610	Silvery flower (tetraploid) 1	0.159
	CNS0095611	Silvery flower (tetraploid) 2	0.303
	CNS0095612	Silvery flower (tetraploid) 3	0.878
	CNS0095613	Golden flower (tetraploid) 1	0.069
	CNS0095614	Golden flower (tetraploid) 2	0.061
	CNS0095615	Golden flower (tetraploid) 3	0.336
CRA001975	CRR073297	Stem 1	9.406
	CRR073298	Stem 2	13.544
	CRR073299	Stem 3	7.534
	CRR073300	Leaf 1	29.790
	CRR073301	Leaf 2	27.136
	CRR073302	Leaf 3	20.471
	CRR073303	Juvenile bud 1	21.470
	CRR073304	Juvenile bud 2	20.810
	CRR073305	Juvenile bud 3	0.069
	CRR073306	Third green 1	0.671
	CRR073307	Third green 2	0.861
	CRR073308	Third green 3	0.588
	CRR073309	Second white 1	0.014
	CRR073310	Second white 2	0.355
	CRR073311	Second white 3	0.581
	CRR073312	Silver flowering 1	1.424
	CRR073313	Silver flowering 2	0.175
	CRR073314	Silver flowering 3	0.267
	CRR073315	Gold flowering 1	1.205
	CRR073316	Gold flowering 2	0.192
	CRR073317	Gold flowering 3	0.881
	CRR073318	Tawny withering 1	0.261
	CRR073319	Tawny withering 2	0.788
	CRR073320	Tawny withering 3	0.372