Gene detail

Detail information of GWHGAAZE002245

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007217075.1	6.6338E-125	hypothetical protein PRUPE_ppa000832mg [Prunus persica]
trEMBL	tr\|M5WX82\|M5WX82_PRUPE	2E-125	Uncharacterized protein {ECO:0000313\|EMBL:EMJ18274.1}
TAIR10	AT1G12470.1	9E-99	zinc ion binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	73603374	73605276	+
GWHAAZE00000001	mRNA	73603374	73605276	+
GWHAAZE00000001	exon	73603374	73603536	+
GWHAAZE00000001	exon	73604188	73604400	+
GWHAAZE00000001	exon	73604663	73604802	+
GWHAAZE00000001	exon	73605151	73605276	+
GWHAAZE00000001	CDS	73603374	73603536	+
GWHAAZE00000001	CDS	73604188	73604400	+
GWHAAZE00000001	CDS	73604663	73604802	+
GWHAAZE00000001	CDS	73605151	73605276	+

Transcript Sequence
>GWHTAAZE002249 ATGGAATTGGGAAGGCAGGTCTTTTCTGTAGATCTTCTTGAGAGATATGCAGCAAAGGGACACGGAGTTATTACATGTATGGCTGCTGGAAATGATGTGATTGTTCTAGGAACTAGTAAAGGATGGGTCATTAGACATGATTTTGGAGTTGGAGATTCTAACGATATTGATCTCTCCGTGGGTCGACCTGGGGAGCAGTCCATCCATAGAGTTTTTGTTGATCCTGGTGGGAGCCACTGTATTGCCACTGTTGTGGGCAGTGGAGGTGCTGATACATATTATACACACGCAAAATGGACAAAGCCTCGCATTTTGACCAAACTGAAAGGTCTTTTGGTTAACGCTGTTGCCTGGAATAGACAACAGATAACAGAAGCTTCTACCAGGGAGGTTATTCTTGGTACAGACAATGGCCAATTGCATGAAATTTGGGTAGATGAAAAAGATAAAAAGGAGAAGTATATGAAGTTTTTATTTGAGCTAACGGAACTTCCAGAAGCTTTCATGGCTTTGCAGGTGGAAACAGCTGGCATGAGCAATGCAACTAGATATTATGTGATGGCTGTTACTCCAACACGACTTTATTCATTCACCGGAATTGGGTTGCTGGAAGTAAGTCTAAATTACATTCCAGATCAGTGA

Network for GWHGAAZE002245

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00439.26	Bromodomain	74	158	5.10E-19
PF17035.6	BET	254	315	6.60E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20181	VPS18, PEP3	Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.225
	SRR3591706	second leaf	10.308
	SRR3591707	mature leaf	6.917
	SRR3591708	Shoot apex	10.521
	SRR3591709	Stem	11.054
	SRR3591710	White floral bud	13.591
	SRR3591711	White flower	9.414
	SRR3591712	Green floral bud	10.631
	SRR3591713	Yellow flower	4.553
SRP173429	SRR8316895	Juvenile bud stage	13.997
	SRR8316896	Juvenile bud stage	18.039
	SRR8316897	Juvenile bud stage	8.257
	SRR8316894	Third green stage	7.401
	SRR8316900	Third green stage	14.615
	SRR8316901	Third green stage	16.357
	SRR8316898	Complete white stage	4.366
	SRR8316899	Complete white stage	11.861
	SRR8316903	Complete white stage	10.773
	SRR8316902	Silver flowering stage	5.019
	SRR8316904	Silver flowering stage	9.254
	SRR8316905	Silver flowering stage	4.004
	SRR8316906	Gold flowering stage	13.819
	SRR8316907	Gold flowering stage	10.665
	SRR8316908	Gold flowering stage	13.539
SRP132670	SRR6706286	Control	18.988
	SRR6706287	Light intensity 50%	20.757
	SRR6706288	Light intensity 20%	23.215
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.246
	CNS0095593	Slightly white alabastrum(diploid) 2	4.028
	CNS0095594	Slightly white alabastrum(diploid) 3	4.712
	CNS0095595	Whole white alabastrum(diploid) 2	5.246
	CNS0095596	Whole white alabastrum(diploid) 3	4.071
	CNS0095597	Whole white alabastrum(diploid) 4	2.893
	CNS0095598	Silvery flower (diploied) 1	9.383
	CNS0095599	Silvery flower (diploied) 2	6.928
	CNS0095600	Silvery flower (diploied) 3	8.297
	CNS0095601	Golden flower (diploid) 1	5.215
	CNS0095602	Golden flower (diploid) 2	9.989
	CNS0095603	Golden flower (diploid) 3	9.679
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.134
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.500
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.097
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.811
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.203
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.895
	CNS0095610	Silvery flower (tetraploid) 1	13.660
	CNS0095611	Silvery flower (tetraploid) 2	9.178
	CNS0095612	Silvery flower (tetraploid) 3	12.607
	CNS0095613	Golden flower (tetraploid) 1	6.085
	CNS0095614	Golden flower (tetraploid) 2	8.617
	CNS0095615	Golden flower (tetraploid) 3	7.326
CRA001975	CRR073297	Stem 1	12.629
	CRR073298	Stem 2	8.723
	CRR073299	Stem 3	4.790
	CRR073300	Leaf 1	9.965
	CRR073301	Leaf 2	8.021
	CRR073302	Leaf 3	3.454
	CRR073303	Juvenile bud 1	4.589
	CRR073304	Juvenile bud 2	3.416
	CRR073305	Juvenile bud 3	5.971
	CRR073306	Third green 1	2.415
	CRR073307	Third green 2	0.683
	CRR073308	Third green 3	2.645
	CRR073309	Second white 1	1.808
	CRR073310	Second white 2	2.815
	CRR073311	Second white 3	2.907
	CRR073312	Silver flowering 1	1.421
	CRR073313	Silver flowering 2	1.175
	CRR073314	Silver flowering 3	0.847
	CRR073315	Gold flowering 1	2.565
	CRR073316	Gold flowering 2	4.707
	CRR073317	Gold flowering 3	1.122
	CRR073318	Tawny withering 1	1.821
	CRR073319	Tawny withering 2	2.599
	CRR073320	Tawny withering 3	5.153