Gene detail

Detail information of GWHGAAZE002246

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP24193.1	hypothetical protein JCGZ_25850 [Jatropha curcas]
trEMBL	tr\|A0A067JN17\|A0A067JN17_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP24193.1}
TAIR10	AT1G12470.1	zinc ion binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	73608522	73622638	+
GWHAAZE00000001	mRNA	73608522	73622638	+
GWHAAZE00000001	exon	73608522	73608674	+
GWHAAZE00000001	exon	73609307	73609450	+
GWHAAZE00000001	exon	73609540	73609659	+
GWHAAZE00000001	exon	73610464	73610520	+
GWHAAZE00000001	exon	73613942	73614049	+
GWHAAZE00000001	exon	73614128	73614212	+
GWHAAZE00000001	exon	73614810	73614930	+
GWHAAZE00000001	exon	73616268	73616346	+
GWHAAZE00000001	exon	73616489	73616551	+
GWHAAZE00000001	exon	73616804	73616934	+
GWHAAZE00000001	exon	73617121	73617159	+
GWHAAZE00000001	exon	73617586	73617691	+
GWHAAZE00000001	exon	73617866	73618054	+
GWHAAZE00000001	exon	73618903	73619130	+
GWHAAZE00000001	exon	73619943	73620098	+
GWHAAZE00000001	exon	73620489	73620641	+
GWHAAZE00000001	exon	73620874	73620993	+
GWHAAZE00000001	exon	73622465	73622638	+
GWHAAZE00000001	CDS	73608522	73608674	+
GWHAAZE00000001	CDS	73609307	73609450	+
GWHAAZE00000001	CDS	73609540	73609659	+
GWHAAZE00000001	CDS	73610464	73610520	+
GWHAAZE00000001	CDS	73613942	73614049	+
GWHAAZE00000001	CDS	73614128	73614212	+
GWHAAZE00000001	CDS	73614810	73614930	+
GWHAAZE00000001	CDS	73616268	73616346	+
GWHAAZE00000001	CDS	73616489	73616551	+
GWHAAZE00000001	CDS	73616804	73616934	+
GWHAAZE00000001	CDS	73617121	73617159	+
GWHAAZE00000001	CDS	73617586	73617691	+
GWHAAZE00000001	CDS	73617866	73618054	+
GWHAAZE00000001	CDS	73618903	73619130	+
GWHAAZE00000001	CDS	73619943	73620098	+
GWHAAZE00000001	CDS	73620489	73620641	+
GWHAAZE00000001	CDS	73620874	73620993	+
GWHAAZE00000001	CDS	73622465	73622638	+

Transcript Sequence
>GWHTAAZE002250 ATGTATAGTTCACCAAATGGAGATGAAAACTTTGTGGAGAACAAGGCTCTTTTGGACTATTCAAAGTTAGTTGAAGGTGACGAGGTGGCTAAACCGAGTTCTCTTGTGGTGTCTGAATTTCACTTTCTGCTTCTCATTGGAAACAAGGTTAAGGTTGTGAATAGAATTAGCGAGCAGATTGTAGAAGAACTTCATTTTGATCAAACACCAGAATCTGTTTCGATGGGTATTATCGGTCTGTGCAGTGATGCCTCTGCTGGATTGTTCTATGCGTATGACCAAAACTCAGTCTTTCAGGTATCTGTAAATGATGAAGGCCGAGATATGTGGAAGGTGTACTTAAACTTGAAGGAATTTACTGAAGCTTTGGCGAATTGCCGTGATCCATTGCAGAGAGACCAAGTATATTTAGAACAGGCTGAAGCTGCATTTTCTGCCAAGGATTTTGTCAGAGCAGCATCTTTCTATGCAAAAGATGCTCTTAGAACTTTCTTGTTGCGGAAGCTTGATAATCTTACAAAGGATGACAAATGCCAAATAACAATGATATCCACATGGGCAACTGAATTGTACCTTGACAAGTTTACAAAGCACATGTACTCAACACCATTTGTTTTTCCTCCTTGTGAAGTGCGAACTACACTTGTGTTTATCGTCAGGCAAAAAGATGATACTACTCCAGAGAATCGTAGTTTTGAATACCAATCGATCACTAGGGAGTTTCGGGCTTTTCTTAGTGACTGCAAGGAGGTGTTGGATGAGGCAACTACAATGAAGCTGTTAGAAAGTTATGGTAGAGTTGATGAATTGGTATATTTTGCTAATCTTAAGGAACAGTATGAAATTGTTATTCACCACTATATTCAGCAAGGACAAGCAAAGAAAGCCTTGGAAGTGCTCCAAAAACCTGCTGTTCCCATAGATCTTCAGTACAAATTTGCGCCAGATCTTATCATGCTTGATGCATATGAAACTGTTGAGTCGTGGATGATAACGAAAGACCTGAATCCGAGGAAGCTAATTCCTGCAATGATGCGTTATTCTAGTGAGCCTCATGCAAAGATATTTCTTTCTTATCCAGACAGTTTCCATGAGGCACTGAATGAAACACATGAAGTGATCAAATATCTCGAATTTTGTGTACATCGTCTGCAGAATGAGGATCCTGGAGTTCACAACTTGTTGCTCTCTTTGTATGCAAAGAAGGAAGATGATGGTGCCCTTCTGCGTTTCCTACAGTGCAAATTTGGCAAAGGAAGACCTAATGGCCCTGATTTCTTCTATGATCCCAAGTATGCTTTACGCCTTTGCCTTAAGGAAAAGCGAATGCGTGCCTGTGTTCATATATACAGCATGATGTCTATGCATGAAGAAGCAGTTGCTCTTGCTCTTCAGGTTGATCCAGAGCTTGCTATGGCCGAGGCGGATAAGGTTGAAGATGATGAAGACCTAAGGAAGAAGCTATGGCTTATGGTTGCCAAGCATGTTGTTGAACAAGAAAAGGGAACTAAAAGGGAGAACATTAGGAAGGCAATAGCATTTTTAAAGGAAACTGACGGATTGTTAAAGATAGAAGATATTTTACCATTCTTTCCGGACTTTGCCCTGATTGATGATTTCAAGGAGGCAATTTGTTCATCGTTAGAGGATTACAACCAGCAAATCGAAAAACTTAAAGAGGAAATGAATGATGCAACACATGGCGCAGACAACATTAGAAATGATATCAGTGCGCTTGCGCAACGATATGCTGTTATTGAACGTGATGAGGAATGCGGGGTTTGCAAGAGGAAGATTTTGTCCGTGGGTGGGGACTATCGTGGTTATGCATCAGTAGGGCCAATGGCTCCTTTTTATGTATTTCCTTGTGGACATGCCTTTCATGCACAATGCTTGATTGCTCACGTTACAAGGTGTACTGATAGAACGCAAGCAGAATATATACTGGATTTGCAGAAGCAACTTACTCTACTCGGCGGTGAGCCCAGGGAGGAGTTAAATGGTGGCTTAACTCGGAGTGAATCCATAACTAGCATGACCCCTTTGGATAAGATCCGATCGCAGTTGGACGATGCTATTGCTAGCGATTGCCCATTTTGTGGGGAATTAATGATCCATGAGATATCCTCGCCTTTTATTCTCCCCGAGGAAGCCCAACAAGTTGCTTCATGGGAGATAAAGCCGCATAACCTTGGATCCCAGAAGAGTCTTTCCTTAGCTTCATGA

Network for GWHGAAZE002246

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05131.15	Pep3_Vps18	8	144	5.10E-36
PF00637.21	Clathrin	368	501	3.10E-11
PF01535.21	PPR	4	27	0.0012

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
K20181	VPS18, PEP3	Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.873
	SRR3591706	second leaf	13.047
	SRR3591707	mature leaf	8.028
	SRR3591708	Shoot apex	20.400
	SRR3591709	Stem	14.109
	SRR3591710	White floral bud	17.536
	SRR3591711	White flower	13.902
	SRR3591712	Green floral bud	14.579
	SRR3591713	Yellow flower	7.896
SRP173429	SRR8316895	Juvenile bud stage	18.346
	SRR8316896	Juvenile bud stage	26.058
	SRR8316897	Juvenile bud stage	12.631
	SRR8316894	Third green stage	10.740
	SRR8316900	Third green stage	22.673
	SRR8316901	Third green stage	20.162
	SRR8316898	Complete white stage	6.297
	SRR8316899	Complete white stage	17.979
	SRR8316903	Complete white stage	12.386
	SRR8316902	Silver flowering stage	7.155
	SRR8316904	Silver flowering stage	11.993
	SRR8316905	Silver flowering stage	4.789
	SRR8316906	Gold flowering stage	12.923
	SRR8316907	Gold flowering stage	14.446
	SRR8316908	Gold flowering stage	13.597
SRP132670	SRR6706286	Control	10.687
	SRR6706287	Light intensity 50%	11.886
	SRR6706288	Light intensity 20%	11.740
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.543
	CNS0095593	Slightly white alabastrum(diploid) 2	16.263
	CNS0095594	Slightly white alabastrum(diploid) 3	17.981
	CNS0095595	Whole white alabastrum(diploid) 2	15.150
	CNS0095596	Whole white alabastrum(diploid) 3	16.536
	CNS0095597	Whole white alabastrum(diploid) 4	14.576
	CNS0095598	Silvery flower (diploied) 1	17.142
	CNS0095599	Silvery flower (diploied) 2	15.824
	CNS0095600	Silvery flower (diploied) 3	8.938
	CNS0095601	Golden flower (diploid) 1	10.168
	CNS0095602	Golden flower (diploid) 2	10.818
	CNS0095603	Golden flower (diploid) 3	10.482
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.511
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.213
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.349
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.257
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.949
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.684
	CNS0095610	Silvery flower (tetraploid) 1	16.364
	CNS0095611	Silvery flower (tetraploid) 2	11.122
	CNS0095612	Silvery flower (tetraploid) 3	16.674
	CNS0095613	Golden flower (tetraploid) 1	8.688
	CNS0095614	Golden flower (tetraploid) 2	11.802
	CNS0095615	Golden flower (tetraploid) 3	8.350
CRA001975	CRR073297	Stem 1	21.239
	CRR073298	Stem 2	18.909
	CRR073299	Stem 3	10.829
	CRR073300	Leaf 1	20.077
	CRR073301	Leaf 2	19.006
	CRR073302	Leaf 3	11.322
	CRR073303	Juvenile bud 1	9.047
	CRR073304	Juvenile bud 2	5.785
	CRR073305	Juvenile bud 3	10.659
	CRR073306	Third green 1	1.610
	CRR073307	Third green 2	2.594
	CRR073308	Third green 3	2.985
	CRR073309	Second white 1	3.447
	CRR073310	Second white 2	3.254
	CRR073311	Second white 3	3.357
	CRR073312	Silver flowering 1	2.105
	CRR073313	Silver flowering 2	1.518
	CRR073314	Silver flowering 3	1.301
	CRR073315	Gold flowering 1	5.710
	CRR073316	Gold flowering 2	4.999
	CRR073317	Gold flowering 3	3.556
	CRR073318	Tawny withering 1	10.157
	CRR073319	Tawny withering 2	10.911
	CRR073320	Tawny withering 3	12.088