Gene detail

Detail information of GWHGAAZE002257

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009760717.1	0	PREDICTED: aromatic-L-amino-acid decarboxylase-like [Nicotiana sylvestris]
COG	YP_005443031.1	6E-99	putative aromatic amino acid decarboxylase
Swissprot	tr\|P17770\|DDC_CATRO	2E-173	Aromatic-L-amino-acid decarboxylase
trEMBL	tr\|P93083\|P93083_CAMAC	0	Tryptophan decarboxylase {ECO:0000313\|EMBL:AAB39709.1}
TAIR10	AT2G20340.1	1E-56	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	73817535	73818674	+
GWHAAZE00000001	mRNA	73817535	73818674	+
GWHAAZE00000001	exon	73817535	73818063	+
GWHAAZE00000001	exon	73818205	73818674	+
GWHAAZE00000001	CDS	73817535	73818063	+
GWHAAZE00000001	CDS	73818205	73818674	+

Transcript Sequence
>GWHTAAZE002261 ATGGTCGACTTCATAGCCGATTACTATGCGAAGATCGAGACCTATCCGGTCCTCAGCCCGGCCCAACCGGGCTACCTCTGGTCCAGGCTCCCCGAAACCGCCCCTCACCAGCCGGAACAATTCGAGTCTATTCTTCAAGATATAAAATCCGATATCATCCCTGGTATGACCCATTGGCTCAGCCCCAACTTCTTTGCATTTTTTCCGGCTACTGTCAGCTCAGCCGCCTTTGTAGGAGAGATGCTCTGCACGTGCTTCAATGCCGTGGGATTCAACTGGCTAGCATCCCCAGCCGCTACAGAGCTCGAGATGGTGGTCATGGACTGGCTCGCCGGCATGCTCACGCTGCCAGAATCTTTCAAGTTTTCTGGCACCGGCGGTGGTGTGATCCAGGGGACCACTAGTGAGTCTATCCTCTGCACCCTCATTGCTGCTAGGGACCGTGCGCTCGAGATCATAGGCGTCGATAATGTAGGCAAGCTTGTAGCGTATGGCTCTGATCAAACGCATTCCACGTTTACAAAGGCATCCACGGTGGCCACCACCTCCACCACGGCCGTGGACCCCATTGGCCCTCTTGCTGACGTGGCGAACCAGTACAATTTGTGGCTCCACGTGGACGCAGCTTATGGTGGGAGTGCCTGTATCTGCCCAGAATTCCGTCACTATTTGAACGGAATTGAACACGCCGACTCACTGAGTCTGAGCCCACATAAGTGGCTACTAAGTTATTTGGATTGTTGTTGCCTTTGGGTCAAAAGGCCCAATTTATTGGTTAGGGCTTTGAGTACTAACCCGGAATATTTGAAAAACCATCTCAGCGAGTCAGACTCGATTGTTGATTATAAGGACTGGCAAGTGGGTACGGGTCGGAGGTTCAAGTCGCTCCGACTTTGGCTTGTTTTACGTAGCTACGGTGTGGCTAACCTGCAGAATCACATCCGGTCTGACGTTAAGATGGCCGAGATGTTCGAGGGGTTTGTTCGATCTGACCCAAGG

Network for GWHGAAZE002257

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0230

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00282.20	Pyridoxal_deC	176	332	5.50E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01593	DDC, TDC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tyrosine metabolism	map00350
		Phenylalanine metabolism	map00360
		Tryptophan metabolism	map00380
		Indole alkaloid biosynthesis	map00901
		Isoquinoline alkaloid biosynthesis	map00950
		Betalain biosynthesis	map00965
		Dopaminergic synapse	map04728
		Serotonergic synapse	map04726
		Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0006520	biological_process	cellular amino acid metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0016831	molecular_function	carboxy-lyase activity
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.279
	SRR3591706	second leaf	0.195
	SRR3591707	mature leaf	0.077
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.523
	SRR3591710	White floral bud	156.605
	SRR3591711	White flower	78.873
	SRR3591712	Green floral bud	12.950
	SRR3591713	Yellow flower	347.043
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.167
	SRR8316897	Juvenile bud stage	0.113
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.058
	SRR8316901	Third green stage	0.287
	SRR8316898	Complete white stage	0.961
	SRR8316899	Complete white stage	0.203
	SRR8316903	Complete white stage	1.222
	SRR8316902	Silver flowering stage	7.112
	SRR8316904	Silver flowering stage	10.863
	SRR8316905	Silver flowering stage	6.523
	SRR8316906	Gold flowering stage	27.296
	SRR8316907	Gold flowering stage	52.986
	SRR8316908	Gold flowering stage	9.352
SRP132670	SRR6706286	Control	7.966
	SRR6706287	Light intensity 50%	9.953
	SRR6706288	Light intensity 20%	0.523
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.078
	CNS0095593	Slightly white alabastrum(diploid) 2	0.074
	CNS0095594	Slightly white alabastrum(diploid) 3	0.275
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.094
	CNS0095597	Whole white alabastrum(diploid) 4	0.239
	CNS0095598	Silvery flower (diploied) 1	7.699
	CNS0095599	Silvery flower (diploied) 2	19.456
	CNS0095600	Silvery flower (diploied) 3	31.300
	CNS0095601	Golden flower (diploid) 1	5.589
	CNS0095602	Golden flower (diploid) 2	34.945
	CNS0095603	Golden flower (diploid) 3	31.903
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.122
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.104
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.165
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.056
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.378
	CNS0095610	Silvery flower (tetraploid) 1	10.512
	CNS0095611	Silvery flower (tetraploid) 2	1.873
	CNS0095612	Silvery flower (tetraploid) 3	26.736
	CNS0095613	Golden flower (tetraploid) 1	7.938
	CNS0095614	Golden flower (tetraploid) 2	10.579
	CNS0095615	Golden flower (tetraploid) 3	14.390
CRA001975	CRR073297	Stem 1	0.145
	CRR073298	Stem 2	0.010
	CRR073299	Stem 3	0.028
	CRR073300	Leaf 1	0.249
	CRR073301	Leaf 2	0.487
	CRR073302	Leaf 3	0.642
	CRR073303	Juvenile bud 1	0.016
	CRR073304	Juvenile bud 2	3.149
	CRR073305	Juvenile bud 3	0.025
	CRR073306	Third green 1	37.944
	CRR073307	Third green 2	85.587
	CRR073308	Third green 3	39.212
	CRR073309	Second white 1	57.106
	CRR073310	Second white 2	54.212
	CRR073311	Second white 3	84.879
	CRR073312	Silver flowering 1	149.526
	CRR073313	Silver flowering 2	217.493
	CRR073314	Silver flowering 3	207.998
	CRR073315	Gold flowering 1	0.034
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.066
	CRR073320	Tawny withering 3	0.000