Gene detail

Detail information of GWHGAAZE002266

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002325682.1	7.81831E-84	hypothetical protein POPTR_0019s14130g [Populus trichocarpa]
Swissprot	tr\|Q7XBH4\|MYB4_ORYSJ	2E-55	Myb-related protein Myb4
trEMBL	tr\|B9INU4\|B9INU4_POPTR	3E-84	Uncharacterized protein {ECO:0000313\|EMBL:EEF00064.1}
TAIR10	AT5G16770.2	2E-45	myb domain protein 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	74168395	74169572	-
GWHAAZE00000001	mRNA	74168395	74169572	-
GWHAAZE00000001	exon	74168395	74168890	-
GWHAAZE00000001	exon	74169014	74169143	-
GWHAAZE00000001	exon	74169440	74169572	-
GWHAAZE00000001	CDS	74169440	74169572	-
GWHAAZE00000001	CDS	74169014	74169143	-
GWHAAZE00000001	CDS	74168395	74168890	-

Transcript Sequence
>GWHTAAZE002270 ATGGGTAGAAAACCAAGAATTGATGAAAATGGAATTAAGAAAGGGGCATGGAGTAAAGAGGAAGATGATAAGTTAAGAGCTTATGTTGAAAGATATGGCCACTGGAATTGGCGTCAACTTCCCAAATTTGCTGGTCTATCCAGATGTGGGAAGAGTTGTAGACTCCGGTGGTTGAATTATCTTCAACAAAATGTCAAAAGGGGAAACTACACCAAGGAAGAAGAAGATATAATTCTCAAAATGCACGAAGAACTTGGAAATAAATGGTCACTTATTGCCGCAAAACTACCCGGAAGGACTGACAATGAGATAAAAAACTACTGGCACTCTCATCTAAAGAAACGCGGAACACAAAGTTCAACATCATGCATCAGTGAATTAACAGAAGACAACACCGTTACCGATGATGTTTCATCTCAACAGACTTCCGAATTCAAAGCCAATGAACAGATAAAATCGACACAAGAGAACAATGTTGATCATGTTTTATTTGAGCAGACTCCAGAAGGCTATTCACAATCAGTTAAATCAACTTCCGATGAACTTTCAACAGACTTCGACTATGCGCTTTCAAATGACATCAATTTGTTCTCCGAAGACAATATCAATTCATTTGAATCAATCGGAAATTTTTGGACCGAACCTTTCTTGGTGGATGGCTTCTACAATCAAAGTCAGTTCTCATCAACTACAACGAGCAGTGGTTTTGTGTCACCTTATGTTTCATACTATGGCGATAGCATTGAGTTTTTTGATCAA

Network for GWHGAAZE002266

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	2.50E-13
PF00249.32	Myb_DNA-binding	67	112	3.10E-15
PF01824.19	MatK_N	1	331	5.10E-169
PF01348.22	Intron_maturas2	359	469	1.80E-35

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006397	biological_process	mRNA processing
GO:0009507	cellular_component	chloroplast
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.657
	SRR3591706	second leaf	0.713
	SRR3591707	mature leaf	2.426
	SRR3591708	Shoot apex	8.894
	SRR3591709	Stem	5.570
	SRR3591710	White floral bud	7.741
	SRR3591711	White flower	54.558
	SRR3591712	Green floral bud	3.801
	SRR3591713	Yellow flower	41.252
SRP173429	SRR8316895	Juvenile bud stage	29.892
	SRR8316896	Juvenile bud stage	18.275
	SRR8316897	Juvenile bud stage	13.568
	SRR8316894	Third green stage	2.183
	SRR8316900	Third green stage	1.846
	SRR8316901	Third green stage	4.747
	SRR8316898	Complete white stage	1.070
	SRR8316899	Complete white stage	14.659
	SRR8316903	Complete white stage	0.663
	SRR8316902	Silver flowering stage	32.145
	SRR8316904	Silver flowering stage	74.906
	SRR8316905	Silver flowering stage	48.597
	SRR8316906	Gold flowering stage	80.158
	SRR8316907	Gold flowering stage	86.616
	SRR8316908	Gold flowering stage	42.964
SRP132670	SRR6706286	Control	1.007
	SRR6706287	Light intensity 50%	1.287
	SRR6706288	Light intensity 20%	0.435
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.539
	CNS0095593	Slightly white alabastrum(diploid) 2	12.251
	CNS0095594	Slightly white alabastrum(diploid) 3	21.399
	CNS0095595	Whole white alabastrum(diploid) 2	5.900
	CNS0095596	Whole white alabastrum(diploid) 3	0.888
	CNS0095597	Whole white alabastrum(diploid) 4	5.096
	CNS0095598	Silvery flower (diploied) 1	55.443
	CNS0095599	Silvery flower (diploied) 2	29.958
	CNS0095600	Silvery flower (diploied) 3	44.131
	CNS0095601	Golden flower (diploid) 1	51.073
	CNS0095602	Golden flower (diploid) 2	35.013
	CNS0095603	Golden flower (diploid) 3	34.500
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.066
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.341
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.046
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.344
	CNS0095610	Silvery flower (tetraploid) 1	7.044
	CNS0095611	Silvery flower (tetraploid) 2	9.512
	CNS0095612	Silvery flower (tetraploid) 3	352.301
	CNS0095613	Golden flower (tetraploid) 1	30.492
	CNS0095614	Golden flower (tetraploid) 2	5.241
	CNS0095615	Golden flower (tetraploid) 3	40.083
CRA001975	CRR073297	Stem 1	0.841
	CRR073298	Stem 2	1.404
	CRR073299	Stem 3	0.445
	CRR073300	Leaf 1	1.255
	CRR073301	Leaf 2	4.356
	CRR073302	Leaf 3	0.474
	CRR073303	Juvenile bud 1	0.678
	CRR073304	Juvenile bud 2	0.740
	CRR073305	Juvenile bud 3	1.518
	CRR073306	Third green 1	210.922
	CRR073307	Third green 2	106.606
	CRR073308	Third green 3	135.620
	CRR073309	Second white 1	155.107
	CRR073310	Second white 2	372.247
	CRR073311	Second white 3	280.897
	CRR073312	Silver flowering 1	163.774
	CRR073313	Silver flowering 2	107.267
	CRR073314	Silver flowering 3	135.257
	CRR073315	Gold flowering 1	0.579
	CRR073316	Gold flowering 2	0.908
	CRR073317	Gold flowering 3	0.738
	CRR073318	Tawny withering 1	0.373
	CRR073319	Tawny withering 2	2.295
	CRR073320	Tawny withering 3	1.137