Gene detail

Detail information of GWHGAAZE002267

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002325682.1	4.09978E-79	hypothetical protein POPTR_0019s14130g [Populus trichocarpa]
Swissprot	tr\|Q7XBH4\|MYB4_ORYSJ	5E-55	Myb-related protein Myb4
trEMBL	tr\|B9INU4\|B9INU4_POPTR	2E-79	Uncharacterized protein {ECO:0000313\|EMBL:EEF00064.1}
TAIR10	AT5G16770.2	3E-45	myb domain protein 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	74212843	74214045	-
GWHAAZE00000001	mRNA	74212843	74214045	-
GWHAAZE00000001	exon	74212843	74213368	-
GWHAAZE00000001	exon	74213481	74213610	-
GWHAAZE00000001	exon	74213913	74214045	-
GWHAAZE00000001	CDS	74213913	74214045	-
GWHAAZE00000001	CDS	74213481	74213610	-
GWHAAZE00000001	CDS	74212843	74213368	-

Transcript Sequence
>GWHTAAZE002271 ATGGGGAGAAAACCAATAATTGATGAAAATGGAATTAAGAAAGGGCCATGGAGTGAAGAGGAAGATGAAAAGCTAAGAGCTTATATTCAAAGATATGGCCATTGGAATTGGCGTCAACTTCCCAAATTTGCTGGTCTATCTAGATGTGGGAAGAGTTGTAGACTCCGGTGGTTGAATTATCTTCAACAAAATGTCAAAAGGGGAAATTACACTAGCGAAGAAGAGGATCTCATTATCAAAATGCGCGAAGAACTTGGAAATAAATGGTCACTTATTGCCGCAAAACTACCTGGAAGGACTGATAACGAGATAAAAAATTATTGGCACTCTTGTCTAAAGAAACGCGTAACACAAAGTTCAACGTCATGCATCAGTGGGTTAACACAAGACGAAACTGTTACGGATGGTGTTTCATCTCAAGAAACCTCTGAATTGAAAGCCAAAGAACGGATAAAATCGGCACAAGAAAACGATGCTGCTGATGTTTTGTCTGAGCAGACTTCTGAAGGCTATTCACAATTAGCTGAATCAACTTCCAGTGAACTTTCATCAGACTTCGACTATGCACTTTCAAATGACATCAATTTCTTCTCAGATGATGGTATCAATTCCTTCGAATCAATCGGCAATTTTTGGACTGAACCGTTCTTAGTAGATGGATTATACAATCAAAGTCATTTCTCATCAACTACGACGGGGAGCAGTTTTGTGTCACCTTTTGTTTCATACTACGACAATAGCATTGAGTATTTCGATCAAGCATTTTTTCAAGAACTGCTCGAAAATTGA

Network for GWHGAAZE002267

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	1.60E-13
PF00249.32	Myb_DNA-binding	67	111	2.00E-13
PF07714.18	PK_Tyr_Ser-Thr	127	242	3.50E-23
PF00069.26	Pkinase	419	630	1.20E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.936
	SRR3591706	second leaf	6.507
	SRR3591707	mature leaf	0.459
	SRR3591708	Shoot apex	16.238
	SRR3591709	Stem	1.701
	SRR3591710	White floral bud	7.891
	SRR3591711	White flower	9.866
	SRR3591712	Green floral bud	20.549
	SRR3591713	Yellow flower	0.887
SRP173429	SRR8316895	Juvenile bud stage	12.324
	SRR8316896	Juvenile bud stage	7.243
	SRR8316897	Juvenile bud stage	3.634
	SRR8316894	Third green stage	2.893
	SRR8316900	Third green stage	4.744
	SRR8316901	Third green stage	5.363
	SRR8316898	Complete white stage	0.095
	SRR8316899	Complete white stage	14.564
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.314
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.084
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.179
	SRR6706287	Light intensity 50%	0.412
	SRR6706288	Light intensity 20%	0.195
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.819
	CNS0095593	Slightly white alabastrum(diploid) 2	11.079
	CNS0095594	Slightly white alabastrum(diploid) 3	13.077
	CNS0095595	Whole white alabastrum(diploid) 2	5.284
	CNS0095596	Whole white alabastrum(diploid) 3	1.495
	CNS0095597	Whole white alabastrum(diploid) 4	8.859
	CNS0095598	Silvery flower (diploied) 1	34.508
	CNS0095599	Silvery flower (diploied) 2	30.281
	CNS0095600	Silvery flower (diploied) 3	10.494
	CNS0095601	Golden flower (diploid) 1	48.714
	CNS0095602	Golden flower (diploid) 2	13.217
	CNS0095603	Golden flower (diploid) 3	13.418
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.573
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.092
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.561
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.793
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.091
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.181
	CNS0095610	Silvery flower (tetraploid) 1	1.314
	CNS0095611	Silvery flower (tetraploid) 2	0.875
	CNS0095612	Silvery flower (tetraploid) 3	4.568
	CNS0095613	Golden flower (tetraploid) 1	0.348
	CNS0095614	Golden flower (tetraploid) 2	0.687
	CNS0095615	Golden flower (tetraploid) 3	0.014
CRA001975	CRR073297	Stem 1	1.087
	CRR073298	Stem 2	0.634
	CRR073299	Stem 3	0.548
	CRR073300	Leaf 1	2.132
	CRR073301	Leaf 2	1.516
	CRR073302	Leaf 3	1.074
	CRR073303	Juvenile bud 1	1.291
	CRR073304	Juvenile bud 2	0.807
	CRR073305	Juvenile bud 3	1.194
	CRR073306	Third green 1	0.147
	CRR073307	Third green 2	0.170
	CRR073308	Third green 3	0.096
	CRR073309	Second white 1	0.035
	CRR073310	Second white 2	0.089
	CRR073311	Second white 3	0.106
	CRR073312	Silver flowering 1	0.020
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.050
	CRR073315	Gold flowering 1	0.313
	CRR073316	Gold flowering 2	0.430
	CRR073317	Gold flowering 3	0.786
	CRR073318	Tawny withering 1	0.180
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000