Gene detail

Detail information of GWHGAAZE002268

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009624516.1	1.44978E-84	PREDICTED: myb-related protein Myb4-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q7XBH4\|MYB4_ORYSJ	2E-56	Myb-related protein Myb4
trEMBL	tr\|A0A061E3S1\|A0A061E3S1_THECC	7E-84	Myb domain protein 15, putative {ECO:0000313\|EMBL:EOX99262.1}
TAIR10	AT3G23250.1	8E-46	myb domain protein 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	74245442	74248045	-
GWHAAZE00000001	mRNA	74245442	74248045	-
GWHAAZE00000001	exon	74247913	74248045	-
GWHAAZE00000001	exon	74247261	74247390	-
GWHAAZE00000001	exon	74245442	74245910	-
GWHAAZE00000001	CDS	74247913	74248045	-
GWHAAZE00000001	CDS	74247261	74247390	-
GWHAAZE00000001	CDS	74245442	74245910	-

Transcript Sequence
>GWHTAAZE002272 ATGGTGAGGACTCCAAGGAATGACAATAGTGGAATTAGGAAGGGAACTTGGACACCTGAAGAAGATAGGAAGTTAGTAGCTTATATTTCTAAATATGGATGTTGGAATTGGCGTCAACTTCCCAAGTATGCAGGACTATCAAGGTGCGGGAAGAGTTGCAGACTGAGATGGATGAACTATTTGCGACCAAATATTAAAAGAGGGAACTACACCAAAGAAGAAGAGGATATCATCCTCAATTTACATGAATCTCTTGGAAATAGATGGTCAACCATTGCAGCACACTTACCAGGAAGAACAGATAACGAGATTAAAAACCATTGGCACACACACCTCCAGAAAAAATTGCAAAAAACCTCAATCTCAACACAAAAAGAACCAAAAAACGAAATTACTCGAGACAAAATATCACAGCCTAATAGTACTTTTTTAGACCTTAAAACTCACAAAATCCTTGAGAGCTACCCATTATCTCCGAAACCATCATCAAGTGAGCTTTCCTCTTCAACAATAACAGACAATTCTTCAACAAAGCCGGAGAAATTTGTTGCCGAAGATGATGCATTTTCGTCCGAATTATTTGAAGTGGACTGTGGTGATTTTTGGACCGAACCATTTTTGGAAGAAAGTTATAGCATGGATAATAATTTTAGTTTTGTCGCGCCATTGGTTGATGCTGAATTTTTTTCTCCATTCTATCCTCTTATTGGGGAAGAATTTTTGTGCTTGTAG

Network for GWHGAAZE002268

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	2.70E-14
PF00249.32	Myb_DNA-binding	67	112	8.30E-16
PF00931.23	NB-ARC	4	95	4.70E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.540
	SRR3591706	second leaf	1.631
	SRR3591707	mature leaf	4.698
	SRR3591708	Shoot apex	1.565
	SRR3591709	Stem	4.821
	SRR3591710	White floral bud	0.739
	SRR3591711	White flower	6.622
	SRR3591712	Green floral bud	0.528
	SRR3591713	Yellow flower	4.179
SRP173429	SRR8316895	Juvenile bud stage	3.096
	SRR8316896	Juvenile bud stage	0.582
	SRR8316897	Juvenile bud stage	1.813
	SRR8316894	Third green stage	0.029
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.335
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.592
	SRR8316903	Complete white stage	0.140
	SRR8316902	Silver flowering stage	0.348
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.977
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.685
	SRR6706287	Light intensity 50%	1.090
	SRR6706288	Light intensity 20%	0.076
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.297
	CNS0095593	Slightly white alabastrum(diploid) 2	15.493
	CNS0095594	Slightly white alabastrum(diploid) 3	9.936
	CNS0095595	Whole white alabastrum(diploid) 2	4.969
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	8.698
	CNS0095599	Silvery flower (diploied) 2	16.408
	CNS0095600	Silvery flower (diploied) 3	5.323
	CNS0095601	Golden flower (diploid) 1	34.608
	CNS0095602	Golden flower (diploid) 2	16.357
	CNS0095603	Golden flower (diploid) 3	15.943
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.381
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.113
	CNS0095611	Silvery flower (tetraploid) 2	0.103
	CNS0095612	Silvery flower (tetraploid) 3	1.331
	CNS0095613	Golden flower (tetraploid) 1	0.050
	CNS0095614	Golden flower (tetraploid) 2	1.341
	CNS0095615	Golden flower (tetraploid) 3	0.227
CRA001975	CRR073297	Stem 1	1.127
	CRR073298	Stem 2	1.685
	CRR073299	Stem 3	0.172
	CRR073300	Leaf 1	0.317
	CRR073301	Leaf 2	0.908
	CRR073302	Leaf 3	0.105
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.245
	CRR073306	Third green 1	0.116
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.042
	CRR073312	Silver flowering 1	0.459
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.125
	CRR073316	Gold flowering 2	1.654
	CRR073317	Gold flowering 3	0.853
	CRR073318	Tawny withering 1	0.122
	CRR073319	Tawny withering 2	3.119
	CRR073320	Tawny withering 3	0.000