Gene detail

Detail information of GWHGAAZE002284

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007043390.1	0	RNI-like/FBD-like domains [Theobroma cacao]
Swissprot	tr\|Q9ZR09\|FDL25_ARATH	4E-142	Putative F-box/FBD/LRR-repeat protein At4g03220
trEMBL	tr\|A0A061E4H0\|A0A061E4H0_THECC	0	RNI-like/FBD-like domains {ECO:0000313\|EMBL:EOX99221.1}
TAIR10	AT4G03220.1	9E-115	Protein with RNI-like/FBD-like domains

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	74769660	74772248	-
GWHAAZE00000001	mRNA	74769660	74772248	-
GWHAAZE00000001	exon	74769660	74769962	-
GWHAAZE00000001	exon	74770341	74770523	-
GWHAAZE00000001	exon	74771199	74772248	-
GWHAAZE00000001	CDS	74771199	74772248	-
GWHAAZE00000001	CDS	74770341	74770523	-
GWHAAZE00000001	CDS	74769660	74769962	-

Transcript Sequence
>GWHTAAZE002288 ATGGAAACAAGATCTGCAAAGAGAAAAAGGCTTTTGAATCAACAAAAATTTAATGGAGGAGAAGACAACCGAGGCGAAGACCGAATCAGCGATCTTCCCAATGCCATTCTCCACCAAATCCTTTTTCTTTTACCCATTCGGTCAATCGCACGAACATCCGTCTTATCGAAAAGATGGAAAAATCTATGGTACACGTTCCCCGATCTTGATTTCACAACCATCAACACATTCCTGAGCTCTAATTTGAATACTCGAAAAAGAAAAAAAATACACACAATTCGAGCCATGGATTTTGTAACCCAGGTTTTGAATCTACGTGGAAAGTACTCTGATATTAGAGTACTGAGGCTTAGGGCGAGCCTCACTTTCTCACGGCTCAACGGTCTGATCCGTTTAGCCGTGAGGCACAATGTCCAAGAAATAGACATTGAGGTAGCCACAAATGATTACTTTAATTTCCCAAGAAGTATCATAAATAGTGACAATTTAAGGGTTTTTAAGCTTAAGTCACATTATCCTGGATTCAGATTGGCTCCCAATACTATAATGAAAGCAGGTTTTCAATCTCTTCACACTTTGTCACTTTCTTTGATCATTTTGTACCAACAACCCTCTCTTCTCGATTTATTTTCCGGTCCTTCTTTTCCGCTTTTAAAGAATTTGAATTTAGATGCGTGTTTTGGATTAAAGCGGCTACGCATTAGTTGCCGTGGGCTCGAGGATTTGACATTGGGGAATTGTTTTCAATTGGATGAGTTGGAGATTTTGTGCCCAAAATTGGAGAGCTTGAGGGTTTCAAGTTGTTTTGATGCGTATAGTACTAATAGTTTTGTGAAGATTGATGCACCAAGGCTTAAGAGAATTGTTTGGGCATATAATGCAGTGACTGAAAAGAGTTGTGTGGATAATTTGAGTTGTTTGAATGAGGCATGTGTTAGTTTCTTTGTGATTCATGAAGAGATGAGTGGGGACAAGCTTTGGAGCATATCAAATTTTCTTTGTGGACTTTCTCATGCAAAGTGTTTGACACTTGAGAACCAATGTGTTGAGATTTTGTCAAAGAATAACCATTTTGCAGGTGTACTCCAACCTTTTACAAACCTGGAATCACTAGAATTGAACACCCATTTCAACAAACACAACATTCCCAAATTGGCAGGCCTTTTGATAAGCTCCCCTCCTATCCACACACTCATTTTCAAGAATGTCAACAATTACAAAGCTCAAAGAAGACAATGGAACAAGGACTTGTGGGACTTAACTAGCTCTGGGCAAGAAGAATACTGGGAATCTCAAAGTGAAGGATTGAAATCCTTTCTTCATCACCTAAAAGTTGTGAAGATCATTGGGTTTTCTGAATGCGAGGATGATATTAGCTTGGTGAAGTTTTTGCTTAAACATGCAAGGGTATTGCAAGAAATGACTCTTTGCTCAGGACAGTGCAATTTTAGAGGCTCCCTAAGGCGCGAAAAAATAAAATCGCAAATGATGGGATTCTCACGTGCTTCTTCTGTTGCTAAACTCGTATTTCAATGA

Network for GWHGAAZE002284

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	28	63	2.80E-07
PF08387.11	FBD	436	476	5.30E-10
PF14111.7	DUF4283	11	67	1.40E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.069
	SRR3591709	Stem	0.068
	SRR3591710	White floral bud	3.427
	SRR3591711	White flower	0.080
	SRR3591712	Green floral bud	9.296
	SRR3591713	Yellow flower	0.088
SRP173429	SRR8316895	Juvenile bud stage	3.323
	SRR8316896	Juvenile bud stage	9.714
	SRR8316897	Juvenile bud stage	4.312
	SRR8316894	Third green stage	3.402
	SRR8316900	Third green stage	10.204
	SRR8316901	Third green stage	10.088
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.048
	SRR8316904	Silver flowering stage	0.090
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.026
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	2.710
	SRR6706287	Light intensity 50%	2.902
	SRR6706288	Light intensity 20%	2.268
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.171
	CNS0095593	Slightly white alabastrum(diploid) 2	7.962
	CNS0095594	Slightly white alabastrum(diploid) 3	15.955
	CNS0095595	Whole white alabastrum(diploid) 2	17.145
	CNS0095596	Whole white alabastrum(diploid) 3	18.388
	CNS0095597	Whole white alabastrum(diploid) 4	15.548
	CNS0095598	Silvery flower (diploied) 1	0.118
	CNS0095599	Silvery flower (diploied) 2	1.619
	CNS0095600	Silvery flower (diploied) 3	0.177
	CNS0095601	Golden flower (diploid) 1	0.560
	CNS0095602	Golden flower (diploid) 2	0.171
	CNS0095603	Golden flower (diploid) 3	0.087
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.377
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.310
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.858
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.139
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.850
	CNS0095610	Silvery flower (tetraploid) 1	0.174
	CNS0095611	Silvery flower (tetraploid) 2	0.300
	CNS0095612	Silvery flower (tetraploid) 3	0.271
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.066
	CNS0095615	Golden flower (tetraploid) 3	0.553
CRA001975	CRR073297	Stem 1	2.341
	CRR073298	Stem 2	3.141
	CRR073299	Stem 3	1.519
	CRR073300	Leaf 1	3.492
	CRR073301	Leaf 2	3.897
	CRR073302	Leaf 3	2.349
	CRR073303	Juvenile bud 1	1.319
	CRR073304	Juvenile bud 2	0.901
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.344
	CRR073307	Third green 2	0.214
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.187
	CRR073311	Second white 3	0.065
	CRR073312	Silver flowering 1	0.429
	CRR073313	Silver flowering 2	0.155
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.083
	CRR073317	Gold flowering 3	0.254
	CRR073318	Tawny withering 1	0.113
	CRR073319	Tawny withering 2	0.204
	CRR073320	Tawny withering 3	0.539