Gene detail

Detail information of GWHGAAZE002289

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP32235.1	4.1875E-166	hypothetical protein JCGZ_13842 [Jatropha curcas]
COG	YP_003669431.1	3E-71	50S ribosomal protein L2
Swissprot	tr\|P29766\|RL8_SOLLC	6E-167	60S ribosomal protein L8
trEMBL	tr\|A0A067KJ21\|A0A067KJ21_JATCU	2E-166	Uncharacterized protein {ECO:0000313\|EMBL:KDP32235.1}
TAIR10	AT4G36130.1	3E-120	Ribosomal protein L2 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	74899646	74901973	+
GWHAAZE00000001	mRNA	74899646	74901973	+
GWHAAZE00000001	exon	74899646	74900126	+
GWHAAZE00000001	exon	74901628	74901973	+
GWHAAZE00000001	five_prime_UTR	74899646	74899686	+
GWHAAZE00000001	CDS	74899687	74900126	+
GWHAAZE00000001	CDS	74901628	74901973	+

Transcript Sequence
>GWHTAAZE002293 AAAACCCTAAAAAAAAACACAAAAACACACACTTTTTTGAGATGGGTCGGGTCATCCGTGGGCAAAGAAAAGGAGCCGGGTCGGTCTTCAAGTCCCACACCCACCACCGCAAGGGTCCAGCCAAGTTCCGGACCCTTGACTTCGGGGAGCGAAACGGGTACCTCAAGGGCGTGGTGACTGACATCGTGCACGATCCTGGTCGTGGCGCCCCGTTAGCTCAGGTCACGTTCCGGCACCCGTTTCGGTACAAGCACCAAAAGGAGCTTTTCGTGGCAGCGGAGGGGATGTACTCGGGGCAGTATGTGTTTTGTGGGAAGAAGGCTAATTTGGCAGTGGGTAACGTGCTACCTCTCCGGTCGATACCCGAGGGTGCGGTGGTGTGTAACGTGGAGCACAAGATAGGGGATCGCGGAACGCTCGCTAGGGCTTCGGGGGATTATGCTATTGTTATTAGTCATAATCTTGATAATGGTACCACCAGGATCAAGCTTCCGTCCGGAGCCAAGAAAATCGTGCCAAGTGGATGCCGAGCTATGATTGGCCAAGTTGCCGGAGGTGGGAGGACAGAGAAACCGCTCTTGAAGGCTGGAAATGCGTACCACAAGTTCAGGGTAAAGAGGAATTGTTGGCCTAGGGTCCGTGGTGTAGCTATGAACCCAGTGGACCATCCCCATGGTGGTGGCAACCACCAGCACGTTAACCATGCCACCACTGTACGTGGTGATGCGCCTGCTGGTGCTAAGGTTGGTCAAATCAGGGCCAGGAGAACCGGCCGTCGTACTGGACAAGCCGCGGTAGCAGCCTCGAAATCCGACAAGATTGGTTAA

Network for GWHGAAZE002289

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00181.24	Ribosomal_L2	13	89	6.00E-16
PF03947.19	Ribosomal_L2_C	98	221	6.20E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02938	RP-L8e, RPL8	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.121
	SRR3591711	White flower	0.275
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.284
SRP173429	SRR8316895	Juvenile bud stage	1.319
	SRR8316896	Juvenile bud stage	1.790
	SRR8316897	Juvenile bud stage	0.155
	SRR8316894	Third green stage	0.285
	SRR8316900	Third green stage	0.076
	SRR8316901	Third green stage	0.246
	SRR8316898	Complete white stage	0.041
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.350
	SRR8316902	Silver flowering stage	0.058
	SRR8316904	Silver flowering stage	0.234
	SRR8316905	Silver flowering stage	0.083
	SRR8316906	Gold flowering stage	0.703
	SRR8316907	Gold flowering stage	1.737
	SRR8316908	Gold flowering stage	0.931
SRP132670	SRR6706286	Control	0.024
	SRR6706287	Light intensity 50%	0.031
	SRR6706288	Light intensity 20%	0.018
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.410
	CNS0095593	Slightly white alabastrum(diploid) 2	0.175
	CNS0095594	Slightly white alabastrum(diploid) 3	0.762
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.075
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.131
	CNS0095599	Silvery flower (diploied) 2	0.206
	CNS0095600	Silvery flower (diploied) 3	0.150
	CNS0095601	Golden flower (diploid) 1	0.476
	CNS0095602	Golden flower (diploid) 2	0.511
	CNS0095603	Golden flower (diploid) 3	0.263
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.341
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.418
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.578
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.497
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.209
	CNS0095610	Silvery flower (tetraploid) 1	0.755
	CNS0095611	Silvery flower (tetraploid) 2	0.796
	CNS0095612	Silvery flower (tetraploid) 3	2.554
	CNS0095613	Golden flower (tetraploid) 1	1.668
	CNS0095614	Golden flower (tetraploid) 2	1.119
	CNS0095615	Golden flower (tetraploid) 3	1.791
CRA001975	CRR073297	Stem 1	1.004
	CRR073298	Stem 2	0.370
	CRR073299	Stem 3	1.267
	CRR073300	Leaf 1	0.014
	CRR073301	Leaf 2	0.027
	CRR073302	Leaf 3	0.145
	CRR073303	Juvenile bud 1	0.026
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.014
	CRR073307	Third green 2	0.067
	CRR073308	Third green 3	0.432
	CRR073309	Second white 1	0.489
	CRR073310	Second white 2	0.486
	CRR073311	Second white 3	0.128
	CRR073312	Silver flowering 1	0.638
	CRR073313	Silver flowering 2	1.252
	CRR073314	Silver flowering 3	1.285
	CRR073315	Gold flowering 1	0.356
	CRR073316	Gold flowering 2	0.240
	CRR073317	Gold flowering 3	0.147
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.015
	CRR073320	Tawny withering 3	0.036