Detail information of GWHGAAZE002295


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008230126.13.08192E-58PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Prunus mume]
Swissprottr|O23372|ATXR3_ARATH1E-31Probable histone-lysine N-methyltransferase ATXR3
trEMBLtr|A0A061E4G1|A0A061E4G1_THECC4E-58SET domain protein 2 isoform 4 {ECO:0000313|EMBL:EOX99206.1}
TAIR10AT4G15180.12E-24SET domain protein 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7508568675086132+
GWHAAZE00000001mRNA7508568675086132+
GWHAAZE00000001exon7508568675086132+
GWHAAZE00000001CDS7508568675086132+
Transcript Sequence

Network for GWHGAAZE002295

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K22748ATXR3, SDG2 Metabolic pathways map01100
Lysine degradationmap00310

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.327
SRR3591706second leaf6.252
SRR3591707mature leaf6.601
SRR3591708Shoot apex4.396
SRR3591709Stem10.438
SRR3591710White floral bud10.384
SRR3591711White flower12.823
SRR3591712Green floral bud6.977
SRR3591713Yellow flower8.540
SRP173429 SRR8316895Juvenile bud stage 3.926
SRR8316896Juvenile bud stage 4.346
SRR8316897Juvenile bud stage 2.942
SRR8316894Third green stage 3.456
SRR8316900Third green stage 4.480
SRR8316901Third green stage 5.090
SRR8316898Complete white stage 1.008
SRR8316899Complete white stage 4.183
SRR8316903Complete white stage 5.684
SRR8316902Silver flowering stage1.719
SRR8316904Silver flowering stage5.168
SRR8316905Silver flowering stage2.242
SRR8316906Gold flowering stage 6.771
SRR8316907Gold flowering stage 6.716
SRR8316908Gold flowering stage 6.464
SRP132670SRR6706286Control8.722
SRR6706287Light intensity 50%9.715
SRR6706288Light intensity 20%10.830
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.580
CNS0095593Slightly white alabastrum(diploid) 20.532
CNS0095594Slightly white alabastrum(diploid) 32.187
CNS0095595Whole white alabastrum(diploid) 21.257
CNS0095596Whole white alabastrum(diploid) 30.156
CNS0095597Whole white alabastrum(diploid) 41.039
CNS0095598Silvery flower (diploied) 12.011
CNS0095599Silvery flower (diploied) 21.899
CNS0095600Silvery flower (diploied) 312.294
CNS0095601Golden flower (diploid) 10.667
CNS0095602Golden flower (diploid) 211.742
CNS0095603Golden flower (diploid) 311.152
CNS0095604Slightly white alabastrum(tetraploid) 12.681
CNS0095605Slightly white alabastrum(tetraploid) 22.403
CNS0095606Slightly white alabastrum(tetraploid) 39.014
CNS0095607Whole white alabastrum(tetraploid) 12.149
CNS0095608Whole white alabastrum(tetraploid) 21.015
CNS0095609Whole white alabastrum(tetraploid) 35.301
CNS0095610Silvery flower (tetraploid) 112.216
CNS0095611Silvery flower (tetraploid) 29.675
CNS0095612Silvery flower (tetraploid) 37.286
CNS0095613Golden flower (tetraploid) 12.657
CNS0095614Golden flower (tetraploid) 27.506
CNS0095615Golden flower (tetraploid) 312.478
CRA001975CRR073297Stem 111.041
CRR073298Stem 28.913
CRR073299Stem 35.925
CRR073300Leaf 17.643
CRR073301Leaf 26.317
CRR073302Leaf 34.913
CRR073303Juvenile bud 14.062
CRR073304Juvenile bud 23.492
CRR073305Juvenile bud 39.875
CRR073306Third green 14.302
CRR073307Third green 22.372
CRR073308Third green 35.282
CRR073309Second white 10.496
CRR073310Second white 26.074
CRR073311Second white 38.708
CRR073312Silver flowering 14.529
CRR073313Silver flowering 23.921
CRR073314Silver flowering 33.813
CRR073315Gold flowering 12.037
CRR073316Gold flowering 22.744
CRR073317Gold flowering 30.385
CRR073318Tawny withering 13.664
CRR073319Tawny withering 22.652
CRR073320Tawny withering 33.341