Gene detail

Detail information of GWHGAAZE002296

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP11835.1	3.4668E-39	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068UTG7\|A0A068UTG7_COFCA	1E-39	Coffea canephora DH200=94 genomic scaffold, scaffold_60 {ECO:0000313\|EMBL:CDP11835.1}
TAIR10	AT4G15180.1	2E-10	SET domain protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	75086173	75089068	+
GWHAAZE00000001	mRNA	75086173	75089068	+
GWHAAZE00000001	exon	75086173	75086281	+
GWHAAZE00000001	exon	75086654	75086737	+
GWHAAZE00000001	exon	75088212	75088594	+
GWHAAZE00000001	exon	75088694	75089068	+
GWHAAZE00000001	CDS	75086173	75086281	+
GWHAAZE00000001	CDS	75086654	75086737	+
GWHAAZE00000001	CDS	75088212	75088594	+
GWHAAZE00000001	CDS	75088694	75089068	+

Transcript Sequence
>GWHTAAZE002300 ATGGATGACAGCTTAGTTGCATCGGAGGCTTTTCATATTGATGAAAGAGTAGGAACCCTTTTAGAGGGCTTCACAATTATTCCTGGCAAGGAACTCGAGACTGTTGGGGAGGTGCTGCAAATGACATTTGAGCATGGGGAGTGGGAGAGATGGGGAAACTGTGAAGGTATCGATACTTATTCCCTTGTTCTTGGTTTCAATTGGCATCAACCTCGGAGGGAACACTCGATCAAAATGCAGGCGAGGACTTCTCCAGTTACCATGAATTTGTATCAAAAGAAACTGCAGAATCAATTGACAAGGGCGGTAGTACCTTTGCTGCTTTGTGATACTGGTGATTGGTTTTCTGGCCAAGTACTTGCAAAGGGCGGTGATTGGAAGAGGAATGATGAAACTGCCCAAGATAGACCTTGGAAAAATTTGTCCTCAACGATGGGTATCCTCTGTGCCAGATGCCAAAGTCTGGTTATGAGGACCCTCGGTGGCATAAAAAAGACGATTTGTACTACCCTTCTCATAGCCGAAGGCTTGACCTCCCATCCTGGGCTTTCTCGACACAAGATGAGTGGATTGATAAGACCACGGTTCATTTATCTCGAGGCGGGTGAAACCAGAGGAAAGGAAAGACACTCCTTGAGGTCTTCTCGGCCATACTCCTCGTCAGCTAGTGATACTAAGAGATCTTCAGAAGAAGGTGGTGGTTCTCGCTTGAAAAATGTGCACGAGCAAGACTTCGCATGGTGGGTATTGGAAGAACATCTCATCGTCCATCAGTATCATCGAAAGACCATCTCTGCACTAGGGATGACCTACAGTTACATTTGGGTGAATGGTACTACCTCGATGGCGTTGGCCATGAACAAGGGCGTTGTTATACTTTCGGAGCTGCAAGTCTTGGCTGATCAAGGTATCATCCAGAAGCATACCAGTGTTTTCAGAAAATTCGATAAG

Network for GWHGAAZE002296

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K22748	ATXR3, SDG2	Metabolic pathways	map01100
K22748	ATXR3, SDG2	Lysine degradation	map00310

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.259
	SRR3591706	second leaf	2.294
	SRR3591707	mature leaf	1.594
	SRR3591708	Shoot apex	1.625
	SRR3591709	Stem	2.261
	SRR3591710	White floral bud	2.301
	SRR3591711	White flower	3.068
	SRR3591712	Green floral bud	1.686
	SRR3591713	Yellow flower	2.425
SRP173429	SRR8316895	Juvenile bud stage	0.672
	SRR8316896	Juvenile bud stage	0.814
	SRR8316897	Juvenile bud stage	0.604
	SRR8316894	Third green stage	0.482
	SRR8316900	Third green stage	0.603
	SRR8316901	Third green stage	1.049
	SRR8316898	Complete white stage	0.189
	SRR8316899	Complete white stage	0.577
	SRR8316903	Complete white stage	0.547
	SRR8316902	Silver flowering stage	0.452
	SRR8316904	Silver flowering stage	1.101
	SRR8316905	Silver flowering stage	0.340
	SRR8316906	Gold flowering stage	0.815
	SRR8316907	Gold flowering stage	0.502
	SRR8316908	Gold flowering stage	0.433
SRP132670	SRR6706286	Control	0.838
	SRR6706287	Light intensity 50%	1.429
	SRR6706288	Light intensity 20%	2.088
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.103
	CNS0095593	Slightly white alabastrum(diploid) 2	0.050
	CNS0095594	Slightly white alabastrum(diploid) 3	0.161
	CNS0095595	Whole white alabastrum(diploid) 2	0.160
	CNS0095596	Whole white alabastrum(diploid) 3	0.081
	CNS0095597	Whole white alabastrum(diploid) 4	0.112
	CNS0095598	Silvery flower (diploied) 1	0.647
	CNS0095599	Silvery flower (diploied) 2	0.167
	CNS0095600	Silvery flower (diploied) 3	1.521
	CNS0095601	Golden flower (diploid) 1	0.443
	CNS0095602	Golden flower (diploid) 2	1.013
	CNS0095603	Golden flower (diploid) 3	0.879
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.112
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.244
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.489
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.229
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.263
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.446
	CNS0095610	Silvery flower (tetraploid) 1	1.021
	CNS0095611	Silvery flower (tetraploid) 2	1.550
	CNS0095612	Silvery flower (tetraploid) 3	0.989
	CNS0095613	Golden flower (tetraploid) 1	0.265
	CNS0095614	Golden flower (tetraploid) 2	1.502
	CNS0095615	Golden flower (tetraploid) 3	1.559
CRA001975	CRR073297	Stem 1	0.816
	CRR073298	Stem 2	0.552
	CRR073299	Stem 3	0.479
	CRR073300	Leaf 1	0.648
	CRR073301	Leaf 2	0.658
	CRR073302	Leaf 3	0.568
	CRR073303	Juvenile bud 1	0.471
	CRR073304	Juvenile bud 2	0.734
	CRR073305	Juvenile bud 3	0.740
	CRR073306	Third green 1	0.332
	CRR073307	Third green 2	0.481
	CRR073308	Third green 3	0.511
	CRR073309	Second white 1	0.072
	CRR073310	Second white 2	0.559
	CRR073311	Second white 3	0.556
	CRR073312	Silver flowering 1	0.411
	CRR073313	Silver flowering 2	0.449
	CRR073314	Silver flowering 3	0.275
	CRR073315	Gold flowering 1	0.026
	CRR073316	Gold flowering 2	0.294
	CRR073317	Gold flowering 3	0.127
	CRR073318	Tawny withering 1	0.515
	CRR073319	Tawny withering 2	0.198
	CRR073320	Tawny withering 3	0.313