Detail information of GWHGAAZE002300


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01944.11.0722E-139unnamed protein product [Coffea canephora]
Swissprottr|Q9SN22|SCL32_ARATH2E-64Scarecrow-like protein 32
trEMBLtr|A0A068U191|A0A068U191_COFCA4E-140Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01944.1}
TAIR10AT3G49950.12E-53GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7524640375247206-
GWHAAZE00000001mRNA7524640375247206-
GWHAAZE00000001exon7524700875247206-
GWHAAZE00000001exon7524640375246977-
GWHAAZE00000001CDS7524700875247206-
GWHAAZE00000001CDS7524640375246977-
Transcript Sequence

Network for GWHGAAZE002300

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS12501.80E-52
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.801
SRR3591707mature leaf0.557
SRR3591708Shoot apex1.428
SRR3591709Stem0.000
SRR3591710White floral bud0.192
SRR3591711White flower0.157
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.268
SRR8316896Juvenile bud stage 0.141
SRR8316897Juvenile bud stage 0.207
SRR8316894Third green stage 0.394
SRR8316900Third green stage 1.124
SRR8316901Third green stage 0.813
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.824
SRR8316903Complete white stage 0.121
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.322
SRR6706287Light intensity 50%0.302
SRR6706288Light intensity 20%0.505
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.291
CNS0095593Slightly white alabastrum(diploid) 20.166
CNS0095594Slightly white alabastrum(diploid) 30.431
CNS0095595Whole white alabastrum(diploid) 20.112
CNS0095596Whole white alabastrum(diploid) 30.084
CNS0095597Whole white alabastrum(diploid) 40.287
CNS0095598Silvery flower (diploied) 10.434
CNS0095599Silvery flower (diploied) 20.477
CNS0095600Silvery flower (diploied) 30.048
CNS0095601Golden flower (diploid) 10.526
CNS0095602Golden flower (diploid) 20.233
CNS0095603Golden flower (diploid) 30.469
CNS0095604Slightly white alabastrum(tetraploid) 10.206
CNS0095605Slightly white alabastrum(tetraploid) 20.057
CNS0095606Slightly white alabastrum(tetraploid) 30.426
CNS0095607Whole white alabastrum(tetraploid) 10.042
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.061
CNS0095611Silvery flower (tetraploid) 20.043
CNS0095612Silvery flower (tetraploid) 30.129
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.754
CRR073298Stem 20.619
CRR073299Stem 30.456
CRR073300Leaf 10.266
CRR073301Leaf 20.391
CRR073302Leaf 30.294
CRR073303Juvenile bud 10.165
CRR073304Juvenile bud 20.024
CRR073305Juvenile bud 30.260
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.299
CRR073316Gold flowering 20.155
CRR073317Gold flowering 30.662
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.012
CRR073320Tawny withering 30.000