Gene detail

Detail information of GWHGAAZE002305

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHG94609.1	0	beta-amylase [Camellia sinensis]
COG	YP_004639880.1	3E-51	beta/alpha-amylase
Swissprot	tr\|O64407\|AMYB_VIGUN	0	Beta-amylase
trEMBL	tr\|W5RW42\|W5RW42_CAMSI	0	Beta-amylase {ECO:0000256\|RuleBase:RU000509}
TAIR10	AT4G15210.1	0	beta-amylase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	75381313	75396045	-
GWHAAZE00000001	mRNA	75381313	75396045	-
GWHAAZE00000001	exon	75395759	75396045	-
GWHAAZE00000001	exon	75387015	75387126	-
GWHAAZE00000001	exon	75386664	75386741	-
GWHAAZE00000001	exon	75385378	75385776	-
GWHAAZE00000001	exon	75384160	75384324	-
GWHAAZE00000001	exon	75383624	75383884	-
GWHAAZE00000001	exon	75382626	75382835	-
GWHAAZE00000001	exon	75381654	75381893	-
GWHAAZE00000001	exon	75381313	75381573	-
GWHAAZE00000001	five_prime_UTR	75395759	75396045	-
GWHAAZE00000001	five_prime_UTR	75387015	75387126	-
GWHAAZE00000001	five_prime_UTR	75386739	75386741	-
GWHAAZE00000001	CDS	75386664	75386738	-
GWHAAZE00000001	CDS	75385378	75385776	-
GWHAAZE00000001	CDS	75384160	75384324	-
GWHAAZE00000001	CDS	75383624	75383884	-
GWHAAZE00000001	CDS	75382626	75382835	-
GWHAAZE00000001	CDS	75381654	75381893	-
GWHAAZE00000001	CDS	75381313	75381573	-

Transcript Sequence
>GWHTAAZE002309 GCACATTTTCGCCAATGAAAAGAGCGATTTCCTTCTCTCGCACGCTAAGTGGGTGCTGTACCATCTGAGCTACAACCCCTTCGATTGTTTATTTTCCGTCTACATATCACAACTATTTCATCGTACGAGGAAAAGGCGCCTTTTTTTCTTTTCAATCTACGTGTACTGTATTATCGTTCGGCAAATTGCCCACCAAAAGTTCTTCACTTCCATGCAAACAATATTTCATCTCAAAGGGGGATCTGCTTGTAATGGGGGGTTTCTCTTCTTCCGCTAACACTCTTGAGTCATTATTGCTGAAGCATGCGGCACGTACCACAGTGACTTACGTGTAAATGTGAGGCACAAGTACCCGCAGCGGCCTGCTCTACTTTGCCAAATAGTAGCGCAGACTTAGAGAAAATGCAAGCTCCAACCACCCTCCGCGACTGTAACAAGATGCTGGCAAATTATGTGCCAATTTATGTAATGCTCCCGCTGGGAGTCATTACAACTGACAACGTTGTTGTCGACATAAAAGGGTTCAAGATGAAGCTTAAGAAGCTGAGAGAGTCGGGGGTTGATGGGGTGATGTTGGATGTTTGGTGGGGGATTGTAGAATCCAAAGGCCCAAAGCAATACGACTGGAGTGCTTATAGGACTTTGTTTCAACTTGTTCAACAATGTGGATTGAAATTACAAGTTGTTATGTCGTTCCACCAATGTGGTGGCAATGTGGGTGATGCGGTTAACATACCGCTACCCCAATGGGTACTTAAGGTTGGGGAGATGGTCCCTGATATCTTCTACACTAATCGAGCCGGTAATAGGGACCAGGAGTATCTCACGATTGGTGTCGATCATCTGCCTCTCTTTTGTGGTCGAACAGCGGTGGAGATCTATAGTGACTACATGAAGAGCTTTAGAGAGAACATGGCAGACTTTTTGGACGCAGAACTGCTAACAGATATTGAAGTAGGTCTTGGTCCCGCAGGCGAGCTGAGATATCCCTCCTATCAACAAAATCAAGGATGGGCTTTTCCCGGTATTGGGGAATTTCAGTGCTATGACAAATTTCTCAAAATGGATTTTAAAGTGGCGGCAACAAAGGCGGGGCACCCTGAATGGGACTTGCCTGATGATGCGGGAGAATATAATGACAAACCAGAATCAACAAAATTCTTTGGATCAAAAGGGTATCTTACATATAAAGGGAAATTCTTCTTGACTTGGTATTCAAACAAGTTGCTGATCCATGGTGATGAGATCCTTGATGAAGCGAACAAAGCCTTTCTGGGCTGTAAAGTCAAGTTGGCAGCTAAGGTATCTGGAATTATCTGGTGGAACAAAGACGATACTCATGCTGCTGAGTTAACTGCAGGATTCTATAATTTGAACGACAGAGATGGCTATCGGCCCATAGCTAGGATGCTCTCGAGGCATTATGGCACTTTGAATTTCACGTGTCTAGAGATTAGGGATGATGAAGTAATTGCAGAAGCTAAAAGTGGGCCTCAAAAACTTGTTCAACAGGTCTTGAGCGATGGGTGGATAGAGAAAATCGAAGTTGCTGGTGAAAATGCACTACCAAGATACGATTGCAAAGCTTATAAGCAAATTCTTCTAAATTGTAGGCCAAACGGTGTCAATCGAAATGGCCCACCTAAACTGAAGACGTCCGGTTTTACTTACCTTCGTTTATCGGATAAGCTACTAAAGGAGGAGAATTTCAGGATATTCAAAACATTTGTGAAGAAATTGCATGCCGATCAGAACTACTGTCCAGATGTTAGAAAGTATAGCACAGTGGTCGCCTTAGAGCGGTCAAAACCAAAGATTCCGATTGAAGAGCTTTTGGAAGCAACCAAAACAATCGAACCGTTCCCATGGGATAAAGAAACAGACACTAGTGTCGACGTAGAAACAGACACGAGTGATGATGAAGAAACAGACACGAGTGACGATGAAGAAACAGAAAAAAGTGTTGATGAAGAAACAGACACTTGTGTTGACGAAGAAACAGACAATGTCTGA

Network for GWHGAAZE002305

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01373.18	Glyco_hydro_14	21	437	5.80E-111

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01177	E3.2.1.2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0000272	biological_process	polysaccharide catabolic process
GO:0016161	molecular_function	beta-amylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.424
	SRR3591706	second leaf	7.443
	SRR3591707	mature leaf	7.853
	SRR3591708	Shoot apex	11.381
	SRR3591709	Stem	48.831
	SRR3591710	White floral bud	4.421
	SRR3591711	White flower	3.276
	SRR3591712	Green floral bud	7.810
	SRR3591713	Yellow flower	1.692
SRP173429	SRR8316895	Juvenile bud stage	7.564
	SRR8316896	Juvenile bud stage	11.144
	SRR8316897	Juvenile bud stage	2.010
	SRR8316894	Third green stage	7.407
	SRR8316900	Third green stage	16.739
	SRR8316901	Third green stage	14.161
	SRR8316898	Complete white stage	5.049
	SRR8316899	Complete white stage	18.606
	SRR8316903	Complete white stage	8.295
	SRR8316902	Silver flowering stage	1.754
	SRR8316904	Silver flowering stage	2.292
	SRR8316905	Silver flowering stage	1.299
	SRR8316906	Gold flowering stage	6.348
	SRR8316907	Gold flowering stage	4.126
	SRR8316908	Gold flowering stage	2.405
SRP132670	SRR6706286	Control	20.408
	SRR6706287	Light intensity 50%	22.335
	SRR6706288	Light intensity 20%	23.346
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.557
	CNS0095593	Slightly white alabastrum(diploid) 2	12.948
	CNS0095594	Slightly white alabastrum(diploid) 3	11.219
	CNS0095595	Whole white alabastrum(diploid) 2	10.767
	CNS0095596	Whole white alabastrum(diploid) 3	11.060
	CNS0095597	Whole white alabastrum(diploid) 4	11.864
	CNS0095598	Silvery flower (diploied) 1	11.319
	CNS0095599	Silvery flower (diploied) 2	7.634
	CNS0095600	Silvery flower (diploied) 3	8.399
	CNS0095601	Golden flower (diploid) 1	7.578
	CNS0095602	Golden flower (diploid) 2	7.658
	CNS0095603	Golden flower (diploid) 3	7.326
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.549
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.533
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.298
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.414
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.574
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.770
	CNS0095610	Silvery flower (tetraploid) 1	7.413
	CNS0095611	Silvery flower (tetraploid) 2	6.204
	CNS0095612	Silvery flower (tetraploid) 3	5.982
	CNS0095613	Golden flower (tetraploid) 1	3.471
	CNS0095614	Golden flower (tetraploid) 2	3.746
	CNS0095615	Golden flower (tetraploid) 3	1.150
CRA001975	CRR073297	Stem 1	13.304
	CRR073298	Stem 2	12.902
	CRR073299	Stem 3	9.822
	CRR073300	Leaf 1	16.339
	CRR073301	Leaf 2	12.029
	CRR073302	Leaf 3	12.550
	CRR073303	Juvenile bud 1	11.430
	CRR073304	Juvenile bud 2	8.245
	CRR073305	Juvenile bud 3	8.518
	CRR073306	Third green 1	5.041
	CRR073307	Third green 2	2.984
	CRR073308	Third green 3	2.632
	CRR073309	Second white 1	0.935
	CRR073310	Second white 2	1.958
	CRR073311	Second white 3	0.959
	CRR073312	Silver flowering 1	0.384
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.524
	CRR073315	Gold flowering 1	1.591
	CRR073316	Gold flowering 2	8.615
	CRR073317	Gold flowering 3	2.511
	CRR073318	Tawny withering 1	10.724
	CRR073319	Tawny withering 2	10.617
	CRR073320	Tawny withering 3	11.034