Gene detail

Detail information of GWHGAAZE002307

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN70833.1	0	hypothetical protein VITISV_005286 [Vitis vinifera]
COG	YP_004639885.1	1E-37	thermophilic beta-amylase
Swissprot	tr\|P10538\|AMYB_SOYBN	0	Beta-amylase
trEMBL	tr\|A5C2F9\|A5C2F9_VITVI	0	Beta-amylase {ECO:0000256\|RuleBase:RU000509}
TAIR10	AT4G15210.1	2E-177	beta-amylase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	75428678	75439040	-
GWHAAZE00000001	mRNA	75428678	75439040	-
GWHAAZE00000001	exon	75428678	75428866	-
GWHAAZE00000001	exon	75428949	75429188	-
GWHAAZE00000001	exon	75435260	75435469	-
GWHAAZE00000001	exon	75435939	75436199	-
GWHAAZE00000001	exon	75436479	75436643	-
GWHAAZE00000001	exon	75437648	75437875	-
GWHAAZE00000001	exon	75437959	75438048	-
GWHAAZE00000001	exon	75438966	75439040	-
GWHAAZE00000001	CDS	75438966	75439040	-
GWHAAZE00000001	CDS	75437959	75438048	-
GWHAAZE00000001	CDS	75437648	75437875	-
GWHAAZE00000001	CDS	75436479	75436643	-
GWHAAZE00000001	CDS	75435939	75436199	-
GWHAAZE00000001	CDS	75435260	75435469	-
GWHAAZE00000001	CDS	75428949	75429188	-
GWHAAZE00000001	CDS	75428678	75428866	-

Transcript Sequence
>GWHTAAZE002311 ATGCAAGCTCAAACCACCCTCTGCGACTGTGAGAAGATGCTGGTAAATTATGTGCCAATTTATGTAATGCTCCCGCTGGGAGTCATTACAACCGACAACGTTGTTGCAGACATAGAAGGGCTCATGATGCAGCTTGAGAAGCTGAGAGAGGCAGGGGTTGATGGGAGACTTGTTCAACAATGTGGATTGAAATTACAAGTTGTTATGTCGTTCCACCAATGCGGTGGCAACGTGGGTGATGAGGTTAACATACCGCTACCCCAATGGGTACTTGAGGTCGGAGAGAAAGTCCCGGATATCTTCTACACTAATCGGGCTGGTAATAGGAACCAGGAGTACCTCACGATTGGTGTTGATCATCTGCCTCTCTTTTGTCATCGAACAGCGGTGGAGATCTATGCTGACTACATGAAGAGCTTTAGAGAGAACATGGCGGACTTTTTGGAAGCAGAACTCCTAACAGACATTGAAGTGGGTCTTGGCCCAGCAGGCGAGCTTAGATATCCCTCCTATCCACAAAATCAAGGATGGGAATTTCCGGGTATTGGGGAATTTCAGTGCTATGACAAATTTCTCAAATGGGATTTTAAAGTGGCGGCAACAAAGGTGGGGCACCCCGAATGGGACTTGCCTGATGATGCGGGAAAATATAATGACAAGCCAGAATCAACAAAGTTCTTTGGATCAAAAGGGTATCTTACGTATAAAGGGAAATTCTTCTTGACTTGGTATTCGAACAAGTTGCTGATCCATGGTGATGAGATCCTTGATGAAGCCAACAAAGCCTTTCTGGGCTGTAAAGTGAAGTTAGCAGCGAAGGTATCTGGAATTCACTGGTGGTACAAAGACGTTACTCATGCTGCTGAGTTAACTGCGGGATTCTATAATTTGGGCAACAGAGATGGCTATCGGCCCATAGCTAGGATGCTCTCAAGGCATTACAGCACTTTGAATTTCACGTGTCTCGAGATGAGGGACACTGAACAACCTGCAAAAGCTAAAAGTGGACCTCAGAAACTTGTTCAACAGGTCTTGAGCGACGGGTGGATAGAGAAAATCGAAGTTGCCGGTGAAAATGCACTCCCAAGATACGATTGCAAAGCTTATAAGCAAATTCTTCTAAATTGTAGGCCAAATGGTGTCAATCGAAATGGCCCACCTAAACTGAAGACGTCTTGCTTTACTTACCTTCGTTTAACGGATGAGCTACTAAAGGAGGACAATTTCAGCATATTCAAAACATTTGTGAAGAAATTGCATGCCGATCAGGACTACTGTCCGGATGTAAGCATGGTGGTCGCCTTAGAGCGATCAAAACCAAGGATTCCGATTGAAGAGCTTTTGGAAGCAACTGAACCAATCGAACCGTTCCCATGGCTTGAAGAAACTGTGACGAAGGTTGTCGAAGTAACAGACACGAGTGATGATGAAGAAACAACAGGAAACAGTTCCGAGTGA

Network for GWHGAAZE002307

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01373.18	Glyco_hydro_14	57	412	1.60E-94

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01177	E3.2.1.2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0000272	biological_process	polysaccharide catabolic process
GO:0016161	molecular_function	beta-amylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.205
	SRR3591706	second leaf	6.553
	SRR3591707	mature leaf	3.276
	SRR3591708	Shoot apex	12.739
	SRR3591709	Stem	16.692
	SRR3591710	White floral bud	1.609
	SRR3591711	White flower	0.467
	SRR3591712	Green floral bud	3.700
	SRR3591713	Yellow flower	0.399
SRP173429	SRR8316895	Juvenile bud stage	0.773
	SRR8316896	Juvenile bud stage	0.964
	SRR8316897	Juvenile bud stage	0.408
	SRR8316894	Third green stage	0.249
	SRR8316900	Third green stage	0.169
	SRR8316901	Third green stage	0.258
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.046
	SRR8316903	Complete white stage	0.070
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.006
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.034
	SRR6706287	Light intensity 50%	0.068
	SRR6706288	Light intensity 20%	0.057
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.617
	CNS0095593	Slightly white alabastrum(diploid) 2	0.029
	CNS0095594	Slightly white alabastrum(diploid) 3	0.777
	CNS0095595	Whole white alabastrum(diploid) 2	0.191
	CNS0095596	Whole white alabastrum(diploid) 3	0.009
	CNS0095597	Whole white alabastrum(diploid) 4	0.120
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.158
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.019
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.602
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.227
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.567
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.452
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.503
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.813
	CNS0095610	Silvery flower (tetraploid) 1	0.283
	CNS0095611	Silvery flower (tetraploid) 2	0.327
	CNS0095612	Silvery flower (tetraploid) 3	0.662
	CNS0095613	Golden flower (tetraploid) 1	0.214
	CNS0095614	Golden flower (tetraploid) 2	0.133
	CNS0095615	Golden flower (tetraploid) 3	0.119
CRA001975	CRR073297	Stem 1	1.824
	CRR073298	Stem 2	1.599
	CRR073299	Stem 3	2.396
	CRR073300	Leaf 1	0.061
	CRR073301	Leaf 2	0.500
	CRR073302	Leaf 3	0.053
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.014
	CRR073306	Third green 1	0.034
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.010
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.033
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.048
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.361
	CRR073319	Tawny withering 2	0.048
	CRR073320	Tawny withering 3	0.171