Gene detail

Detail information of GWHGAAZE002309

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHG94609.1	0	beta-amylase [Camellia sinensis]
COG	YP_004639885.1	3E-49	thermophilic beta-amylase
Swissprot	tr\|P10538\|AMYB_SOYBN	0	Beta-amylase
trEMBL	tr\|W5RW42\|W5RW42_CAMSI	0	Beta-amylase {ECO:0000256\|RuleBase:RU000509}
TAIR10	AT4G15210.1	0	beta-amylase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	75470090	75474212	-
GWHAAZE00000001	mRNA	75470090	75474212	-
GWHAAZE00000001	exon	75470090	75470293	-
GWHAAZE00000001	exon	75470367	75470606	-
GWHAAZE00000001	exon	75471171	75471380	-
GWHAAZE00000001	exon	75471764	75472024	-
GWHAAZE00000001	exon	75472321	75472485	-
GWHAAZE00000001	exon	75473829	75474212	-
GWHAAZE00000001	CDS	75473829	75474212	-
GWHAAZE00000001	CDS	75472321	75472485	-
GWHAAZE00000001	CDS	75471764	75472024	-
GWHAAZE00000001	CDS	75471171	75471380	-
GWHAAZE00000001	CDS	75470367	75470606	-
GWHAAZE00000001	CDS	75470090	75470293	-

Transcript Sequence
>GWHTAAZE002313 ATGGATAACGTTGTCCTGGACAAAGACGGACTCGAGAAGCAGCTCAAGATGCTGGTTGCGGCAGGGGTTGATGGGGTGATGTTGGATGTTTGGTGGGGGATTATAGAAGCCAAAGGCCCGATGCAATACGATTGGAGCGCTTATAGGACCTTGTTTCAACTTGTTCAACAATGCGGATTGAAATTACAAGTTGTTATGTCGTTTCACCAATGTGGTGGCAACGTGGGTGATGTGGTTAATATACCATTACCACAATGGGTACTCAAGGTTGGAGAGGAAAACCCTGATATCTTCTACACTAATCGAGCTGGTAACAGGAACGAAGAGTACCTCACAATTGGTGTGGATCATCTGCCTCTCTTTAGTGGTCGAACAGCTGTGGAGATCTATAGTGACTATATGAAGAGCTTTAGAGAGAACATGGTGGACTTTTTGGAAGCAGAACTCCTAACAGACATTGAAGTTGGTCTTGGCCCCGCAGGGGAGCTGAGATATCCCTCCTACCCACAAAATCAAGGATGGGTTTTTCCGGGTATTGGGGAATTTCAGTGCTATGACAAATATCTCAAAGCTGATTTTAAAGAGAAAGCAACAAAGGCAGGGCACCCTGAATGGGACCTACCAGATGATGCAGGAGTATATAATGACACGCCAGAATCAACAGGGTTCTTTGGATCAAAAGGGTACCTTACAGAAAAAGGGAAATTCTTCTTGACTTGGTATTCGAACAAGTTGCTTATCCATGGTGATGAGATCCTTGATGAAGCGAACAAAGCTTTTCTGGGCTGTAAAGTCAAGTTAGCAGCTAAGGTATCTGGAATACACTGGTGGTACAAAGATGATACTCACGCTGCTGAGTTAACTGCGGGATTCTACAATTTGAACGACAGAGATGGCTATCGGCCCATAGCTAGGATGCTCTCAAGGCATCATGGCACTTTGAATTTCACGTGTCTCGAGATGAGGGACACTGAACAACCTGCAACAGCTAAAAGCGGACCTCAGGAACTTGTTCAGCAGGTCTTGAGTGACGGGTGGACAGAGAAGATCGAAGTTGCAGGTGAAAATGCACTCACAAGATACGACCGTACTGCTTATAACCAAATCCTTCTAAATACTAGGCCGAATGGTGTCAATCGAAATGGCCCACCTAAACTGAAGATGTCCGGCTTGACTTACCTTCGTTTATCCGATGAGCTACTACAGAAGAAGAATTTCAGGATATTCAAAATATTTGTGAAGAAATTGCATGCTGATCAGAACTACTGTCCGGATGTAAGAAAGTATAGCACAGTTGTCGCCTTGGAGCGATCAAAACCAAAGATTCCGATCAAAGAGCTTTTGGAAGCAACTGAACCGATCACACCATTTCCATGGGATGAAGAAACAGATATGAGTGTTGGTGGTGCACTTGCCGATTATTTGGACAAAGTATTCGGCAGGATCACTTCAATATTTTACTGA

Network for GWHGAAZE002309

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01373.18	Glyco_hydro_14	7	406	4.10E-114

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01177	E3.2.1.2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0000272	biological_process	polysaccharide catabolic process
GO:0016161	molecular_function	beta-amylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	85.479
	SRR3591706	second leaf	56.635
	SRR3591707	mature leaf	21.953
	SRR3591708	Shoot apex	82.798
	SRR3591709	Stem	60.044
	SRR3591710	White floral bud	18.594
	SRR3591711	White flower	17.870
	SRR3591712	Green floral bud	17.197
	SRR3591713	Yellow flower	1.391
SRP173429	SRR8316895	Juvenile bud stage	28.236
	SRR8316896	Juvenile bud stage	21.154
	SRR8316897	Juvenile bud stage	10.675
	SRR8316894	Third green stage	3.758
	SRR8316900	Third green stage	8.518
	SRR8316901	Third green stage	6.905
	SRR8316898	Complete white stage	1.502
	SRR8316899	Complete white stage	13.783
	SRR8316903	Complete white stage	4.434
	SRR8316902	Silver flowering stage	0.100
	SRR8316904	Silver flowering stage	0.604
	SRR8316905	Silver flowering stage	0.123
	SRR8316906	Gold flowering stage	0.515
	SRR8316907	Gold flowering stage	0.403
	SRR8316908	Gold flowering stage	1.136
SRP132670	SRR6706286	Control	10.936
	SRR6706287	Light intensity 50%	8.422
	SRR6706288	Light intensity 20%	8.204
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.988
	CNS0095593	Slightly white alabastrum(diploid) 2	10.631
	CNS0095594	Slightly white alabastrum(diploid) 3	11.870
	CNS0095595	Whole white alabastrum(diploid) 2	10.296
	CNS0095596	Whole white alabastrum(diploid) 3	8.453
	CNS0095597	Whole white alabastrum(diploid) 4	7.129
	CNS0095598	Silvery flower (diploied) 1	54.901
	CNS0095599	Silvery flower (diploied) 2	41.761
	CNS0095600	Silvery flower (diploied) 3	11.203
	CNS0095601	Golden flower (diploid) 1	83.451
	CNS0095602	Golden flower (diploid) 2	38.155
	CNS0095603	Golden flower (diploid) 3	39.630
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.219
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.454
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.953
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.181
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.477
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.129
	CNS0095610	Silvery flower (tetraploid) 1	1.281
	CNS0095611	Silvery flower (tetraploid) 2	29.122
	CNS0095612	Silvery flower (tetraploid) 3	3.423
	CNS0095613	Golden flower (tetraploid) 1	0.664
	CNS0095614	Golden flower (tetraploid) 2	0.977
	CNS0095615	Golden flower (tetraploid) 3	0.341
CRA001975	CRR073297	Stem 1	51.867
	CRR073298	Stem 2	29.696
	CRR073299	Stem 3	61.838
	CRR073300	Leaf 1	7.521
	CRR073301	Leaf 2	7.738
	CRR073302	Leaf 3	7.243
	CRR073303	Juvenile bud 1	6.564
	CRR073304	Juvenile bud 2	3.989
	CRR073305	Juvenile bud 3	11.278
	CRR073306	Third green 1	0.714
	CRR073307	Third green 2	1.126
	CRR073308	Third green 3	1.673
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.057
	CRR073311	Second white 3	0.316
	CRR073312	Silver flowering 1	0.406
	CRR073313	Silver flowering 2	0.500
	CRR073314	Silver flowering 3	0.118
	CRR073315	Gold flowering 1	9.190
	CRR073316	Gold flowering 2	7.597
	CRR073317	Gold flowering 3	5.641
	CRR073318	Tawny withering 1	11.544
	CRR073319	Tawny withering 2	6.706
	CRR073320	Tawny withering 3	10.820