Gene detail

Detail information of GWHGAAZE002323

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011100299.1	0	PREDICTED: isocitrate lyase [Sesamum indicum]
COG	YP_002492134.1	9E-108	isocitrate lyase
Swissprot	tr\|P49297\|ACEA_SOLLC	0	Isocitrate lyase
trEMBL	tr\|A0A022QAZ4\|A0A022QAZ4_ERYGU	0	Isocitrate lyase {ECO:0000256\|PIRNR:PIRNR001362}
TAIR10	AT3G21720.1	0	isocitrate lyase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	75760925	75763012	+
GWHAAZE00000001	mRNA	75760925	75763012	+
GWHAAZE00000001	exon	75760925	75762527	+
GWHAAZE00000001	exon	75762918	75763012	+
GWHAAZE00000001	CDS	75760925	75762527	+
GWHAAZE00000001	CDS	75762918	75763012	+

Transcript Sequence
>GWHTAAZE002327 ATGGAAGAAGAAGGCAGGTTTGAGGCCGAAGTAGCCGAGGTGCAAACATGGTGGAACTCCGACAGGTTCAGGCTCACCCGCCGCCCCTACTCTGCCCGAGACGTGGTCTCTCTTCGAGGCAACCTCCGCCAATCCTATGGCTCCAATGAGCTTGCAAAAAAGCTATGGCGAACCCTTAAGACCCACCAAGCCAACGGCACATCCTCAAGGACTTTCGGTGCACTTGACCCGGTCCAAGTCACCATGATGGCTAAACATTTGGACACCATTTACGTCTCGGGCTGGCAATGCTCATCAACCCACACCTCCACCAATGAGCCCGGGCCGGACCTAGCTGACTACCCCTATGACACGGTCCCCAACAAGGTCGAGCACCTCTTTTTCGCCCAACAATACCATGACCGAAAGCAGAGAGAGGCTCGCATGAGCATGACTCGAGAAGAGCGGGCCCGTACCCCATTTATCGATTACCTAAAACCCATAATTGCTGATGGTGACACTGGATTTGGTGGGGCCACTGCTACCGTAAAGCTCTGTAAGCTTTTCGTGGAGCGTGGGGCCGCCGGGGTCCACATTGAGGACCAGTCCTCTGTTACTAAAAAATGCGGCCACATGGCCGGGAAAGTGCTGGTTGCCGTGAGCGAACATATTAACAGGTTGGTGGCCGCCAGGTTACAGTTCGACATTATGGGGGTCGAGACTGTCCTTGTGGCACGGACCGATGCAGAGGCGGCTACTTTAATACAGTCGAATATTGACACCCGGGATCACCAGTTCATCCTTGGGGTGACGAACCCGAACCTCAAGGGGAAAGGATTGGCCACAATTCTGTCGGAAGCAATGGCAGCCGGTAAGACTGGGGTGGAGCTCCAGGCACTCGAGGATAACTGGCTTGCGTCAGCACAACTCAAGACGTTTTCTGAGTGCGTAGTGGACGCGATCGGGAAAATGAACATCATGGAAAACGAGAAGCGGGCGCGTCTGAAGGAGTGGATCAACTGCACGAGCTACGAAAAATGCATGTCGAACGAGCAGGGCCGGGAGATTGCTGATCGGCTTGGTCTGACCGGCTCGTACTTTTTTGACTGGGATCTGGCAAGGACCCGAGAGGGGTTCTACCGATTCCGGGGATCAGTGGAAGCCGCCGTGGTCCGTGGATGGGCATTTGCCCCACACGCGGACGTCATCTGGATGGAGACGGGTAGCCCTGACCTAGCCGAGTGCACCCAGTTTGCACAAGGGGTGAAGTCGGTCCAACCCGAAACAATGCTGGCTTATAATCTGTCACCATCTTTTAACTGGGACGCATCGGGTATGAATGATCAGCAAATGGTGGACTTCATACCGCGTATTGCAAAGCTCGGGTACTGTTGGCAGTTCATTACGCTGGCCGGTTTTCACGCAGACGCGCTTGTGGTGGATACATTTGCTAAGGATTTTGCAAACAGGGGGATGTTGGCATATGTGGAGAGGATACAGAGGGAAGAGAGAAGCAATGGTGTTGATACTTTGGCTCACCAGAAATGGTCTGGTGCTAATTACTATGATAGGGTGTTGAGGACTGTTCAGGGTGGTATTACTTCCACTGCGGCCATGGGGAAAGGAGTGACTGAGGAGCAGTTCAAAGAAACATGGACTAGGTCTGGAGCAACAGATATGGGTGATGGAAGGGTTGTAATTGCCAAGTCAAGAATGTAG

Network for GWHGAAZE002323

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00463.22	ICL	10	541	5.00E-274

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01637	E4.1.3.1, aceA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630

Gene Ontology

GO term	Ontology	Name
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004451	molecular_function	isocitrate lyase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.087
	SRR3591711	White flower	0.121
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.087
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.039
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.040
	SRR8316900	Third green stage	0.047
	SRR8316901	Third green stage	0.078
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.079
	SRR8316907	Gold flowering stage	0.081
	SRR8316908	Gold flowering stage	0.030
SRP132670	SRR6706286	Control	0.132
	SRR6706287	Light intensity 50%	0.127
	SRR6706288	Light intensity 20%	0.084
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.148
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.079
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.037
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.131
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.026
	CNS0095610	Silvery flower (tetraploid) 1	0.087
	CNS0095611	Silvery flower (tetraploid) 2	0.046
	CNS0095612	Silvery flower (tetraploid) 3	0.264
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.105
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.194
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.037
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000