Detail information of GWHGAAZE002348


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO54656.10hypothetical protein CISIN_1g001917mg [Citrus sinensis]
COGNP_389683.10aconitate hydratase
Swissprottr|P49608|ACOC_CUCMA0Aconitate hydratase, cytoplasmic
trEMBLtr|A0A067EUS4|A0A067EUS4_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO54656.1}
TAIR10AT2G05710.10aconitase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7643189276443059-
GWHAAZE00000001mRNA7643189276443059-
GWHAAZE00000001exon7643189276432003-
GWHAAZE00000001exon7643282676433068-
GWHAAZE00000001exon7643316176433259-
GWHAAZE00000001exon7643456576435044-
GWHAAZE00000001exon7643512776435225-
GWHAAZE00000001exon7643537776435498-
GWHAAZE00000001exon7643614676436264-
GWHAAZE00000001exon7643637476436441-
GWHAAZE00000001exon7643703576437220-
GWHAAZE00000001exon7643742776437502-
GWHAAZE00000001exon7643760676437685-
GWHAAZE00000001exon7643785376437909-
GWHAAZE00000001exon7643801776438159-
GWHAAZE00000001exon7643852176438665-
GWHAAZE00000001exon7643999476440155-
GWHAAZE00000001exon7644040976440594-
GWHAAZE00000001exon7644127876441370-
GWHAAZE00000001exon7644144976441609-
GWHAAZE00000001exon7644182676441930-
GWHAAZE00000001exon7644256076442640-
GWHAAZE00000001exon7644277176443059-
GWHAAZE00000001CDS7644277176443059-
GWHAAZE00000001CDS7644256076442640-
GWHAAZE00000001CDS7644182676441930-
GWHAAZE00000001CDS7644144976441609-
GWHAAZE00000001CDS7644127876441370-
GWHAAZE00000001CDS7644040976440594-
GWHAAZE00000001CDS7643999476440155-
GWHAAZE00000001CDS7643852176438665-
GWHAAZE00000001CDS7643801776438159-
GWHAAZE00000001CDS7643785376437909-
GWHAAZE00000001CDS7643760676437685-
GWHAAZE00000001CDS7643742776437502-
GWHAAZE00000001CDS7643703576437220-
GWHAAZE00000001CDS7643637476436441-
GWHAAZE00000001CDS7643614676436264-
GWHAAZE00000001CDS7643537776435498-
GWHAAZE00000001CDS7643512776435225-
GWHAAZE00000001CDS7643456576435044-
GWHAAZE00000001CDS7643316176433259-
GWHAAZE00000001CDS7643282676433068-
GWHAAZE00000001CDS7643193576432003-
GWHAAZE00000001three_prime_UTR7643189276431934-
Transcript Sequence

Network for GWHGAAZE002348

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00330.21Aconitase1876901.80E-177
PF00694.20Aconitase_C8199472.50E-42
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01681ACO, acnA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cyclemap00020
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation pathways in prokaryotesmap00720

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf97.794
SRR3591706second leaf66.503
SRR3591707mature leaf46.215
SRR3591708Shoot apex67.239
SRR3591709Stem76.804
SRR3591710White floral bud126.865
SRR3591711White flower207.875
SRR3591712Green floral bud222.626
SRR3591713Yellow flower297.461
SRP173429 SRR8316895Juvenile bud stage 72.247
SRR8316896Juvenile bud stage 137.270
SRR8316897Juvenile bud stage 77.194
SRR8316894Third green stage 75.412
SRR8316900Third green stage 245.877
SRR8316901Third green stage 251.494
SRR8316898Complete white stage 49.770
SRR8316899Complete white stage 154.242
SRR8316903Complete white stage 103.994
SRR8316902Silver flowering stage51.524
SRR8316904Silver flowering stage60.814
SRR8316905Silver flowering stage28.506
SRR8316906Gold flowering stage 180.195
SRR8316907Gold flowering stage 117.916
SRR8316908Gold flowering stage 173.370
SRP132670SRR6706286Control257.311
SRR6706287Light intensity 50%228.030
SRR6706288Light intensity 20%245.058
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1100.567
CNS0095593Slightly white alabastrum(diploid) 2103.794
CNS0095594Slightly white alabastrum(diploid) 3104.500
CNS0095595Whole white alabastrum(diploid) 2116.707
CNS0095596Whole white alabastrum(diploid) 3136.752
CNS0095597Whole white alabastrum(diploid) 4100.933
CNS0095598Silvery flower (diploied) 152.973
CNS0095599Silvery flower (diploied) 263.399
CNS0095600Silvery flower (diploied) 3159.831
CNS0095601Golden flower (diploid) 174.084
CNS0095602Golden flower (diploid) 2180.732
CNS0095603Golden flower (diploid) 3169.146
CNS0095604Slightly white alabastrum(tetraploid) 1195.737
CNS0095605Slightly white alabastrum(tetraploid) 2160.719
CNS0095606Slightly white alabastrum(tetraploid) 3146.187
CNS0095607Whole white alabastrum(tetraploid) 1169.159
CNS0095608Whole white alabastrum(tetraploid) 2159.160
CNS0095609Whole white alabastrum(tetraploid) 3278.543
CNS0095610Silvery flower (tetraploid) 1164.527
CNS0095611Silvery flower (tetraploid) 2150.080
CNS0095612Silvery flower (tetraploid) 3134.214
CNS0095613Golden flower (tetraploid) 184.065
CNS0095614Golden flower (tetraploid) 2200.320
CNS0095615Golden flower (tetraploid) 373.889
CRA001975CRR073297Stem 1174.972
CRR073298Stem 2173.292
CRR073299Stem 3135.490
CRR073300Leaf 1279.604
CRR073301Leaf 2260.774
CRR073302Leaf 3232.011
CRR073303Juvenile bud 1255.642
CRR073304Juvenile bud 2202.330
CRR073305Juvenile bud 3365.359
CRR073306Third green 195.169
CRR073307Third green 250.587
CRR073308Third green 376.285
CRR073309Second white 1116.348
CRR073310Second white 2111.246
CRR073311Second white 3123.470
CRR073312Silver flowering 1153.300
CRR073313Silver flowering 2178.612
CRR073314Silver flowering 3179.908
CRR073315Gold flowering 161.748
CRR073316Gold flowering 292.022
CRR073317Gold flowering 369.981
CRR073318Tawny withering 177.364
CRR073319Tawny withering 273.450
CRR073320Tawny withering 346.266