Gene detail

Detail information of GWHGAAZE002349

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267415.1	0	PREDICTED: NEDD8-activating enzyme E1 regulatory subunit [Vitis vinifera]
COG	YP_006438923.1	1E-11	UBA/THIF-type NAD/FAD binding protein
Swissprot	tr\|P42744\|ULA1_ARATH	0	NEDD8-activating enzyme E1 regulatory subunit {ECO:0000305}
trEMBL	tr\|D7TE75\|D7TE75_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28798.3}
TAIR10	AT1G05180.1	0	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	76496209	76511815	+
GWHAAZE00000001	mRNA	76496209	76511815	+
GWHAAZE00000001	exon	76496209	76496246	+
GWHAAZE00000001	exon	76499463	76499635	+
GWHAAZE00000001	exon	76499715	76499878	+
GWHAAZE00000001	exon	76501136	76501246	+
GWHAAZE00000001	exon	76501384	76501463	+
GWHAAZE00000001	exon	76507333	76507577	+
GWHAAZE00000001	exon	76507744	76507806	+
GWHAAZE00000001	exon	76508952	76509040	+
GWHAAZE00000001	exon	76509387	76509460	+
GWHAAZE00000001	exon	76509600	76509762	+
GWHAAZE00000001	exon	76510090	76510175	+
GWHAAZE00000001	exon	76511129	76511170	+
GWHAAZE00000001	exon	76511584	76511815	+
GWHAAZE00000001	CDS	76496209	76496246	+
GWHAAZE00000001	CDS	76499463	76499635	+
GWHAAZE00000001	CDS	76499715	76499878	+
GWHAAZE00000001	CDS	76501136	76501246	+
GWHAAZE00000001	CDS	76501384	76501463	+
GWHAAZE00000001	CDS	76507333	76507577	+
GWHAAZE00000001	CDS	76507744	76507806	+
GWHAAZE00000001	CDS	76508952	76509040	+
GWHAAZE00000001	CDS	76509387	76509460	+
GWHAAZE00000001	CDS	76509600	76509762	+
GWHAAZE00000001	CDS	76510090	76510175	+
GWHAAZE00000001	CDS	76511129	76511170	+
GWHAAZE00000001	CDS	76511584	76511815	+

Transcript Sequence
>GWHTAAZE002353 ATGGCGGAACCCAAAACCAAATACGATCGTCAGCTCAGGATCTGGGGTGAGCAGGGACAAGCTGCCCTTGAGAAGGCAAGTATATGCTTACTCAATTGTGGTCCTACTGGTTCAGAAACCCTAAAAAATCTTGTCCTTGGTGGTATTGGAAGTATTACTGTCATTGATGGATCGAAAGTTGATGTGGGTGACCTTGGAAATAACTTCATGGTGGATGAAAAAAGTGTTGGGCAATCAAAGGCAAAATGCGTATGCGAATTTCTTCAGGAGCTAAATGATGCTGTTAAAACCAAATTCATTGAAGAGTATCCAGAGGCTTTGATTGAGACAAACCCGTCGTTCTTTTCTCAGTTTGCCTTGGTAGTAGCAACACAGTTGGTGGAAGATTCAATGATCAAACTGGATCGAATCTGTCGGGAGGCAAATGTTATGTTGATATTTGCGCGGTCGTACGGACTCACTGGATTTGTTCGGATCAGTGTGAAGGAACATGCTGTGATCGAATCAAAGCCTGATCATTTTCTGGACGATCTTCGGCTAAATAACCCATGGCCTGAGCTTAGGAGGTTTGTGGAAACAATTGATGTAAACATTTCTGATCCTGTGGCACATAAGCATACACCATATGTTATTATTCTTGTCAAGATGGTGGAGGAGTGGGCCCAAAGTCACGGTGGAATCCTTCCTTCAACAAGGGAAGAGAAAAAGGAGTTCAAGGAACTAATTAAAAAGAAGATGATCTCAATGGATGAAGATAACTATAAAGAAGCTATTGAGGCCTCGTTCAAAGTCTTTGCTCCTCGAGGAATAAGAGTGGCCCCTAGCCCCAGCTTGGTGGATCAATATGAATCTGGTGACAGCATTGCGGCTAGGGGTTCAAGTCTGCTGCAGATAATAAATGACCCCTGTGCTGAAGTCGATTCTAGTTCATCGGATTTTTGGGTGATGGTGGCAGCCTTAAAGGAGTTCATTGCTAATGAAGGTGGTGGGGAGGCACCACTTGAGGGATCAATACCAGATATGACATCTTCTACCGAGTTATATGTAAATCTTCAGAAAATTTATCAAGCGAAGGCTGAGGCTGATTTTTCAGTAGTTGAGCAACGGGTGAAACATATCCTGAAGAAAGTTGGTAGAGATCCTGATAGCATTTCGAAAACAAACATTAAAAGTTTCTGTAAAAATGCAAGGAAGCTCACAGTTTGCAGATATCGCGCCATTGAGGATGAATTCAACTCTCCTATCCAACCAGAGTTACAGAAATATCTAACAGATGAGGACTACAGTATGGCTGTGGGGTTCTATGTGCTACTTCGAGCTGTTGACCGTGAGATGGATGAGGATATATCTCGGTTGAAAACTACAGCGGTTAGCCTACTGAGTGACTTGGGTTGCAATGGCTCAACCTTGACAGAGGACCTTATAAATGAGATGTGCCGGTATGGTGCAGCAGAGCTCCATGCAGTTGCTGCCTTCAGTGGCGGAATCGCTTCACAGGAAGTTATCAAAGTTTGTGTTTCTCTCTCAGCTCCTTCTGAAGTTTATATATTTCTCCAGTGA

Network for GWHGAAZE002349

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00899.22	ThiF	8	505	2.10E-24

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ThiF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0045116	biological_process	protein neddylation
GO:0008641	molecular_function	ubiquitin-like modifier activating enzyme activity
GO:0019781	molecular_function	NEDD8 activating enzyme activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.419
	SRR3591706	second leaf	14.992
	SRR3591707	mature leaf	16.286
	SRR3591708	Shoot apex	25.182
	SRR3591709	Stem	19.962
	SRR3591710	White floral bud	16.168
	SRR3591711	White flower	21.778
	SRR3591712	Green floral bud	19.595
	SRR3591713	Yellow flower	14.697
SRP173429	SRR8316895	Juvenile bud stage	17.416
	SRR8316896	Juvenile bud stage	21.594
	SRR8316897	Juvenile bud stage	11.376
	SRR8316894	Third green stage	8.023
	SRR8316900	Third green stage	25.733
	SRR8316901	Third green stage	20.925
	SRR8316898	Complete white stage	7.491
	SRR8316899	Complete white stage	31.822
	SRR8316903	Complete white stage	12.467
	SRR8316902	Silver flowering stage	10.677
	SRR8316904	Silver flowering stage	14.159
	SRR8316905	Silver flowering stage	5.023
	SRR8316906	Gold flowering stage	17.423
	SRR8316907	Gold flowering stage	17.252
	SRR8316908	Gold flowering stage	15.791
SRP132670	SRR6706286	Control	20.130
	SRR6706287	Light intensity 50%	23.395
	SRR6706288	Light intensity 20%	24.862
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.531
	CNS0095593	Slightly white alabastrum(diploid) 2	14.548
	CNS0095594	Slightly white alabastrum(diploid) 3	13.551
	CNS0095595	Whole white alabastrum(diploid) 2	13.204
	CNS0095596	Whole white alabastrum(diploid) 3	11.891
	CNS0095597	Whole white alabastrum(diploid) 4	11.234
	CNS0095598	Silvery flower (diploied) 1	20.012
	CNS0095599	Silvery flower (diploied) 2	18.084
	CNS0095600	Silvery flower (diploied) 3	22.049
	CNS0095601	Golden flower (diploid) 1	15.456
	CNS0095602	Golden flower (diploid) 2	19.964
	CNS0095603	Golden flower (diploid) 3	16.720
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.574
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.149
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.836
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.571
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.156
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.428
	CNS0095610	Silvery flower (tetraploid) 1	28.308
	CNS0095611	Silvery flower (tetraploid) 2	22.516
	CNS0095612	Silvery flower (tetraploid) 3	15.187
	CNS0095613	Golden flower (tetraploid) 1	10.418
	CNS0095614	Golden flower (tetraploid) 2	16.102
	CNS0095615	Golden flower (tetraploid) 3	8.294
CRA001975	CRR073297	Stem 1	28.754
	CRR073298	Stem 2	26.467
	CRR073299	Stem 3	25.111
	CRR073300	Leaf 1	29.836
	CRR073301	Leaf 2	25.090
	CRR073302	Leaf 3	21.353
	CRR073303	Juvenile bud 1	24.270
	CRR073304	Juvenile bud 2	17.580
	CRR073305	Juvenile bud 3	27.587
	CRR073306	Third green 1	4.530
	CRR073307	Third green 2	6.294
	CRR073308	Third green 3	6.269
	CRR073309	Second white 1	5.873
	CRR073310	Second white 2	5.841
	CRR073311	Second white 3	5.931
	CRR073312	Silver flowering 1	3.052
	CRR073313	Silver flowering 2	3.379
	CRR073314	Silver flowering 3	3.589
	CRR073315	Gold flowering 1	11.876
	CRR073316	Gold flowering 2	22.061
	CRR073317	Gold flowering 3	12.814
	CRR073318	Tawny withering 1	18.792
	CRR073319	Tawny withering 2	20.060
	CRR073320	Tawny withering 3	27.760