Gene detail

Detail information of GWHGAAZE002351

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006447574.1	2.34122E-88	hypothetical protein CICLE_v10014958mg [Citrus clementina]
Swissprot	tr\|A2WW87\|GAM1_ORYSI	1E-65	Transcription factor GAMYB
trEMBL	tr\|V4W488\|V4W488_9ROSI	9E-89	Uncharacterized protein {ECO:0000313\|EMBL:ESR60814.1}
TAIR10	AT2G32460.1	2E-60	myb domain protein 101

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	76549166	76552091	-
GWHAAZE00000001	mRNA	76549166	76552091	-
GWHAAZE00000001	exon	76549166	76549446	-
GWHAAZE00000001	exon	76550749	76551559	-
GWHAAZE00000001	exon	76551777	76552091	-
GWHAAZE00000001	CDS	76551777	76552091	-
GWHAAZE00000001	CDS	76550749	76551559	-
GWHAAZE00000001	CDS	76549166	76549446	-

Transcript Sequence
>GWHTAAZE002355 ATGTCACAGGAAGAAGGCGACGGAAGTGGCAGTCCGGAGGCGGCAGCGGGGAGGCGGCAGGTGCTGAAGAAGGGTCCGTGGACTGCGGTCGAGGACTCCATCTTGTTGGACTATGTTAGAAAACATGGTGAAGGGAATTGGAATGCTGTACAAAGGAATTCTGGGCTTCTGAGATGTGGTAAAAGTTGTAGGCTTAGATGGGCTAACCATCTTAGGCCTAATCTTAAAAAAGGTGCCATTACTCCTGACGAAGAGATGCTCATCATTGAGCTCCATGCCAAATATGGTAACAAATGGGCTCGTATGGCTTCTCAGCTTCCTGGCAGAACAGATAATGAAATAAAGAACTACTGGAACACAAGGGTGAAGAGACGCCAGCGTGCAGGTTTACCAATTTACCCTCGGGAATCACGACAACACCGGCACTATCACCAGCAGAACCACCTGCAGCCACTGCCACAAATCCTACCCAACTCTTCGCCGTCTACTCTCTCATCACTCCTATCACCACCACCCCCGCCACCACAACCCTTGTTTCAAGGGCAAAACCCTAGCTACAACCGCACGGGCACCCTCTTTGATGCTATCAACTATCAACCCCCAACACAAAACCCTAATTCTTCATATCTCACAGGTCCCAACCACTACTTCAAGATTTTGCGTGACAACAATGGCGGTCTCGCCCTCTCTCTGTCATCTTCGCCGCCTCTATCTTCTGCGCTGACTTTAGACCATCAAGGCTTCATCACCTCAAATTTTTTCTCTAAACCTTCGAGTGAATTCGACTCTCTCAATTTTAGTACCAATCAAAACTCAATGAATGGAGCTGAAAACGAGCTCCATTCAATCCAAAGAAAGGGGCTACAAACTACCCAAGATTCTAATGGGCTCAATAATGACGCTGGGGTTGAATATGAGGTGGCGCTATCGAGTGAAACAAATGATTATGAATTTGAACCTGAGCTTATGCGAGGGAGCAGTGGTTTGTTGGGTGATTTGTTGGTAGGAGCCGGAGCTGGAGCTATGATACATGTAGATGACAATTCGAAGGATGAAAAACCGCTTGCGGGCAAGACAGATAAAGGAAATTCATCAACAGGAGATGGGTTGATTGAGGATTCGACTGCGACAAAAACGAATGATGTAAATGAGGATATGAATATTGTGGATGATGATTTCTTTGGTGGCTTGCTTGACTTCCATATGACGGTTCCTGTCCCTGACTGGTATGATGGAACTGACAATATTTCAAATGGACAATCAACGAATGTGACAAATGTCAATGTGGGGATGGAGAATATTCGGCAGGGATCGCCTCAAACTTCAACTGAGAACACTTCAGTGCCATTGAGCCCTAACTCGAACGCGGATGTGTACTGGTGGAAGAACATGTCTATCATTTCCTAA

Network for GWHGAAZE002351

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	24	71	3.50E-13
PF00249.32	Myb_DNA-binding	77	120	4.80E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.059
	SRR3591710	White floral bud	13.153
	SRR3591711	White flower	0.316
	SRR3591712	Green floral bud	6.981
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.008
	SRR8316896	Juvenile bud stage	1.483
	SRR8316897	Juvenile bud stage	0.528
	SRR8316894	Third green stage	0.813
	SRR8316900	Third green stage	6.176
	SRR8316901	Third green stage	5.399
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.198
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.025
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	4.934
	SRR6706287	Light intensity 50%	5.342
	SRR6706288	Light intensity 20%	3.377
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.380
	CNS0095593	Slightly white alabastrum(diploid) 2	7.059
	CNS0095594	Slightly white alabastrum(diploid) 3	7.499
	CNS0095595	Whole white alabastrum(diploid) 2	17.689
	CNS0095596	Whole white alabastrum(diploid) 3	20.685
	CNS0095597	Whole white alabastrum(diploid) 4	21.315
	CNS0095598	Silvery flower (diploied) 1	0.283
	CNS0095599	Silvery flower (diploied) 2	1.674
	CNS0095600	Silvery flower (diploied) 3	0.481
	CNS0095601	Golden flower (diploid) 1	0.264
	CNS0095602	Golden flower (diploid) 2	0.213
	CNS0095603	Golden flower (diploid) 3	0.223
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.115
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.214
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.043
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.033
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.552
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.459
	CNS0095610	Silvery flower (tetraploid) 1	0.066
	CNS0095611	Silvery flower (tetraploid) 2	1.041
	CNS0095612	Silvery flower (tetraploid) 3	2.221
	CNS0095613	Golden flower (tetraploid) 1	0.147
	CNS0095614	Golden flower (tetraploid) 2	0.072
	CNS0095615	Golden flower (tetraploid) 3	0.870
CRA001975	CRR073297	Stem 1	4.329
	CRR073298	Stem 2	3.627
	CRR073299	Stem 3	6.613
	CRR073300	Leaf 1	7.278
	CRR073301	Leaf 2	5.466
	CRR073302	Leaf 3	0.990
	CRR073303	Juvenile bud 1	9.541
	CRR073304	Juvenile bud 2	11.443
	CRR073305	Juvenile bud 3	0.277
	CRR073306	Third green 1	3.045
	CRR073307	Third green 2	1.882
	CRR073308	Third green 3	2.184
	CRR073309	Second white 1	0.043
	CRR073310	Second white 2	0.442
	CRR073311	Second white 3	0.392
	CRR073312	Silver flowering 1	2.419
	CRR073313	Silver flowering 2	2.384
	CRR073314	Silver flowering 3	1.992
	CRR073315	Gold flowering 1	1.560
	CRR073316	Gold flowering 2	0.334
	CRR073317	Gold flowering 3	1.091
	CRR073318	Tawny withering 1	1.905
	CRR073319	Tawny withering 2	2.843
	CRR073320	Tawny withering 3	1.183