Gene detail

Detail information of GWHGAAZE002355

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009627930.1	0	PREDICTED: DNA repair protein RAD16 [Nicotiana tomentosiformis]
COG	YP_630479.1	3E-38	SNF2/helicase domain-containing protein
Swissprot	tr\|Q9FNI6\|SM3L2_ARATH	3E-85	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
trEMBL	tr\|M1D7D0\|M1D7D0_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400083926}
TAIR10	AT1G05120.1	0	Helicase protein with RING/U-box domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	76688650	76698815	+
GWHAAZE00000001	mRNA	76688650	76698815	+
GWHAAZE00000001	exon	76688650	76688761	+
GWHAAZE00000001	exon	76688876	76689493	+
GWHAAZE00000001	exon	76689791	76690353	+
GWHAAZE00000001	exon	76690636	76690758	+
GWHAAZE00000001	exon	76690887	76690960	+
GWHAAZE00000001	exon	76691706	76691769	+
GWHAAZE00000001	exon	76691886	76692032	+
GWHAAZE00000001	exon	76692597	76692682	+
GWHAAZE00000001	exon	76693926	76693995	+
GWHAAZE00000001	exon	76694139	76694264	+
GWHAAZE00000001	exon	76696536	76696769	+
GWHAAZE00000001	exon	76697403	76697507	+
GWHAAZE00000001	exon	76697610	76697762	+
GWHAAZE00000001	exon	76698170	76698258	+
GWHAAZE00000001	exon	76698341	76698421	+
GWHAAZE00000001	exon	76698627	76698815	+
GWHAAZE00000001	CDS	76688650	76688761	+
GWHAAZE00000001	CDS	76688876	76689493	+
GWHAAZE00000001	CDS	76689791	76690353	+
GWHAAZE00000001	CDS	76690636	76690758	+
GWHAAZE00000001	CDS	76690887	76690960	+
GWHAAZE00000001	CDS	76691706	76691769	+
GWHAAZE00000001	CDS	76691886	76692032	+
GWHAAZE00000001	CDS	76692597	76692682	+
GWHAAZE00000001	CDS	76693926	76693995	+
GWHAAZE00000001	CDS	76694139	76694264	+
GWHAAZE00000001	CDS	76696536	76696769	+
GWHAAZE00000001	CDS	76697403	76697507	+
GWHAAZE00000001	CDS	76697610	76697762	+
GWHAAZE00000001	CDS	76698170	76698258	+
GWHAAZE00000001	CDS	76698341	76698421	+
GWHAAZE00000001	CDS	76698627	76698699	+
GWHAAZE00000001	three_prime_UTR	76698700	76698815	+

Transcript Sequence
>GWHTAAZE002359 ATGATTCGCAATGTCAAAGCAGACAATAATCTCCAATATACAGAGAGCTCAATCGAAGATGATGCTTATGAAGTCTCCTCCGACTCCAGTTATCATGGTGTTAGTGATGAAGGTGAAGCATTTCTAAGTACTGTGGAAGAAGAAGGTGGGGCTGAGATTTTGGACTTAAATCGTGAGCCAGAGGTTGAGGCTGCATTGAAGAAGAAAGTGGGACCAACGAGTCACAAGAGGGATAGAGCGAAAGAGGAAGAAGGGGTGGTGGGTGGAATGAACGGCCAAGAACAAGTTCATGAGCTGGAGGTTGATTTTCTTGGAGGAATAAAGAACATGAACGAGAGGAAGAAGAAGAAGAGGAAGAAGAAGAACGGAGAGACCCGACCGACGCTGTTGTGGGAAATTTGGGAAGAGGAGCTTAATAGATGGGTTGAACAGAATATTAATATAGATGTTGATCTAGATAATCAGAACGAAGTGATTGCAGAGACTGTTGAGCCACCTTCAGATTTGATTATGCCTTTGTTGAGGTATCAAAAAGAATGGTTAGCTTGGGCATTGAAGCAAGAAGAATCTGCTGCAAGAGGGGGCATCCTTGCTGATGAAATGGGCATGGGGAAGACTGTTCAAGCTATCGCACTTGTCCTCGCCAAAAGGGAACTCGCCTGTGCAATTGGTGCACTCCACGGGGTTTCACCCTGTCCCAGCTCCTCCACAGCATTGCCAGAAATTAAAGGTACCCTTGTAATATGTCCCTTGGTTGCTGTGATTCAATGGGTCAATGAGATTGATCGATTTACCACAAAAGGAAGCAACAAGGTGCTAGTTTATCATGGAGCCAATAGAGGGAAGAGTCTTCACCAATTCTCCGAATATGATTTTGTCATAACAACATACTCTATTGTCGAGGCAGAGTATAGGAAGAACGTAATGCCACCTAAGCAGAAATGCCAGTGGTGTGGGAAGTTATTTTATGACAAAAAGATGTCTATTCACCTGAAATATTTTTGTGGGCCCGATGCAGTTAGAACTGATAAGCAGTCAAAGCAGCAGAGGAAGGGGCGGATGCCTGAACTGACAAATTCAAAGCAGAAAGCATGTGATAACGATGAGGAACACAGTGAATCGGGGGATGATAAAAGTAAGGGAGCTCGCAAGAAAACTGTGAGGCATTCCAAGAAAAAAAAGAAATTGGGTGTTGGTTCTTCGAATTATAATTTGGAAGGAGATGAACATGATTTGTCCGCAAGGAAATCTAGTTTGCACTCTGTAAAATGGGATCGCATTATATTGGATGAGGCTCACTATATAAAAGATAGACGCTGTAACACTACAAAAGCTGTTCTTGCCTTACAATCTTCTTATAAATGGGCTTTAAGTGGAACTCCCCTTCAAAATCGTGTTGGAGAACTTTACTCACTGGTCCGATTCCTTCAAATATCCCCTTACTCATATTACTTCTGTAAGGATTGTGATTGCAGAGAACTTGATTATAGTGCATCTACTGATTGTCCAAGCTGTCCTCATAAATCTGTGAGGCACTTTTGCTGGTGGAACAAATTTGTTGCTACGCCAATACAAGCTCAAGGGAATTTTGGCGATGGTAAAAGGGCCATGATTTTACTGAAGCATAAAATTTTGAAAGGCATAGTTCTGAGACGTACTAAAAAGGGCAGAGCTGCTGATCTTGCGCTTCCTCCTAGAATTGTTTCATTGAGAAAAGACTCTTTGGATATTAAAGAAGAAGACTATTACATATCATTGTACAATGAAAGCCAGGCACAATTTAATACATACATTGAGGAAGGAACAGTGATGAATAACTATGCTCACATATTTGACCTACTCACGCGACTGCGGCAGGCAGTTGATCATCCTTACCTTGTAGTATATTCTAGTTCTGCAATGGCAAAAAGCGGACGACTGCCCGATGCCAGTAATGATGAAGAAGTATGTGGCTTATGTCATGATCCAGTAGAAGATCCTGTGGTTACTTCCTGTACGCATGTATTCTGCAAGTCTTGTTTGATTGATTTCTCTGCTAGCATGGGAGAAGTCTCCTGCCCTTCATGTTCAAAACCACTTACTGTGGACTTCAGTACAAGCAATTATCATGGTGATCAGAATAATTCGAAAACGACTGTTAAAGGGTTTAAGCGCTCCAGTATTTTAAACAGGATCCGGCTTGATGAATTCCAGACTAGCACAAAAATTGATGCTCTGAGAGAAGAAATTAGATTCATGGTTGAAAGGGATGGTTCTGCGAAAGGAATTGTTTTCAGCCAATTTACTTCATTCTTGGATCTCATACACTATTCCCTCCAGAAGTCTGGGGTTAATTGTGTTCAATTAGTCGGGTCCATGACTATGAATGCAAGAGATGCAGCAATTACGAAATTTACGGAGGACCCAGATTGCAAAATTTTCCTAATGAGCTTGAAAGCTGGAGGTGTTGCCCTCAATCTTACAGTTGCTTCACATGTTTTCTTGATGGACCCTTGGTGGAACCCAGCAGTGGAGAGACAGGCTCAAGATAGAATCCATCGAATAGGTCAATACAAACCCATCAGGATCGTGAGATTTGTTATTCAGAACACAATCGAGGAAAGGATCTTGAAGTTGCAAGAGAAAAAGGAACTAGTTTTTGAAGGGACTGTTGGTGGGTGTTCAGAGGCACTGGGGAAATTAACAGAAGCAGACATGAGGTTTCTGTTTGTCACCTAAGCAGGATTTTAGGCTCATAATATATGGTCCTAAAGTCGGTTTCTTTTGATATCTCATAGGTTCTTTTTTTGACTAGTCCTGAATCAAGGGCCAGTTTTATAGGTTGAATTACGGAT

Network for GWHGAAZE002355

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	189	482	1.00E-46
PF00097.26	zf-C3HC4	650	689	8.50E-06
PF00271.32	Helicase_C	737	849	3.70E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.482
	SRR3591706	second leaf	9.010
	SRR3591707	mature leaf	11.137
	SRR3591708	Shoot apex	17.319
	SRR3591709	Stem	23.779
	SRR3591710	White floral bud	30.559
	SRR3591711	White flower	56.081
	SRR3591712	Green floral bud	19.933
	SRR3591713	Yellow flower	48.307
SRP173429	SRR8316895	Juvenile bud stage	14.547
	SRR8316896	Juvenile bud stage	23.637
	SRR8316897	Juvenile bud stage	11.440
	SRR8316894	Third green stage	9.096
	SRR8316900	Third green stage	21.529
	SRR8316901	Third green stage	18.818
	SRR8316898	Complete white stage	9.017
	SRR8316899	Complete white stage	22.608
	SRR8316903	Complete white stage	19.162
	SRR8316902	Silver flowering stage	22.188
	SRR8316904	Silver flowering stage	33.393
	SRR8316905	Silver flowering stage	16.156
	SRR8316906	Gold flowering stage	57.292
	SRR8316907	Gold flowering stage	52.846
	SRR8316908	Gold flowering stage	56.826
SRP132670	SRR6706286	Control	20.150
	SRR6706287	Light intensity 50%	20.178
	SRR6706288	Light intensity 20%	19.933
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.861
	CNS0095593	Slightly white alabastrum(diploid) 2	14.884
	CNS0095594	Slightly white alabastrum(diploid) 3	15.062
	CNS0095595	Whole white alabastrum(diploid) 2	15.931
	CNS0095596	Whole white alabastrum(diploid) 3	11.097
	CNS0095597	Whole white alabastrum(diploid) 4	14.085
	CNS0095598	Silvery flower (diploied) 1	19.726
	CNS0095599	Silvery flower (diploied) 2	17.182
	CNS0095600	Silvery flower (diploied) 3	41.111
	CNS0095601	Golden flower (diploid) 1	19.133
	CNS0095602	Golden flower (diploid) 2	34.647
	CNS0095603	Golden flower (diploid) 3	31.545
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.765
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.198
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.355
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.375
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.170
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.225
	CNS0095610	Silvery flower (tetraploid) 1	60.459
	CNS0095611	Silvery flower (tetraploid) 2	55.663
	CNS0095612	Silvery flower (tetraploid) 3	47.419
	CNS0095613	Golden flower (tetraploid) 1	24.656
	CNS0095614	Golden flower (tetraploid) 2	36.389
	CNS0095615	Golden flower (tetraploid) 3	33.098
CRA001975	CRR073297	Stem 1	17.296
	CRR073298	Stem 2	16.069
	CRR073299	Stem 3	11.435
	CRR073300	Leaf 1	17.718
	CRR073301	Leaf 2	15.014
	CRR073302	Leaf 3	12.505
	CRR073303	Juvenile bud 1	10.859
	CRR073304	Juvenile bud 2	9.633
	CRR073305	Juvenile bud 3	16.366
	CRR073306	Third green 1	14.243
	CRR073307	Third green 2	8.684
	CRR073308	Third green 3	12.320
	CRR073309	Second white 1	16.661
	CRR073310	Second white 2	29.430
	CRR073311	Second white 3	33.849
	CRR073312	Silver flowering 1	25.147
	CRR073313	Silver flowering 2	17.929
	CRR073314	Silver flowering 3	18.535
	CRR073315	Gold flowering 1	9.478
	CRR073316	Gold flowering 2	8.893
	CRR073317	Gold flowering 3	6.072
	CRR073318	Tawny withering 1	13.519
	CRR073319	Tawny withering 2	13.435
	CRR073320	Tawny withering 3	12.304