Detail information of GWHGAAZE002356


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010258792.10PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Nelumbo nucifera]
COGYP_002526717.11E-128dihydrolipoamide succinyltransferase
Swissprottr|Q8H107|ODO2B_ARATH0Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial (Precursor)
trEMBLtr|M0TWH6|M0TWH6_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P01190_001}
TAIR10AT5G55070.11E-151Dihydrolipoamide succinyltransferase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7677638776784343-
GWHAAZE00000001mRNA7677638776784343-
GWHAAZE00000001exon7677638776776578-
GWHAAZE00000001exon7677778376777977-
GWHAAZE00000001exon7677865476778764-
GWHAAZE00000001exon7677986476779954-
GWHAAZE00000001exon7678009676780190-
GWHAAZE00000001exon7678113176781400-
GWHAAZE00000001exon7678183976781883-
GWHAAZE00000001exon7678199276782047-
GWHAAZE00000001exon7678235276782426-
GWHAAZE00000001exon7678251976782589-
GWHAAZE00000001exon7678303276783059-
GWHAAZE00000001exon7678317376783233-
GWHAAZE00000001exon7678432676784343-
GWHAAZE00000001CDS7678432676784343-
GWHAAZE00000001CDS7678317376783233-
GWHAAZE00000001CDS7678303276783059-
GWHAAZE00000001CDS7678251976782589-
GWHAAZE00000001CDS7678235276782426-
GWHAAZE00000001CDS7678199276782047-
GWHAAZE00000001CDS7678183976781883-
GWHAAZE00000001CDS7678113176781400-
GWHAAZE00000001CDS7678009676780190-
GWHAAZE00000001CDS7677986476779954-
GWHAAZE00000001CDS7677865476778764-
GWHAAZE00000001CDS7677778376777977-
GWHAAZE00000001CDS7677638776776578-
Transcript Sequence

Network for GWHGAAZE002356

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00364.23Biotin_lipoyl671361.30E-17
PF00198.242-oxoacid_dh2054336.00E-79
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00658DLST, sucB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Citrate cyclemap00020
Lysine degradationmap00310
Tryptophan metabolismmap00380

Gene Ontology

GO term OntologyName
GO:0006099biological_processtricarboxylic acid cycle
GO:0045252cellular_componentoxoglutarate dehydrogenase complex
GO:0016746molecular_functiontransferase activity, transferring acyl groups
GO:0004149molecular_functiondihydrolipoyllysine-residue succinyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf145.465
SRR3591706second leaf58.326
SRR3591707mature leaf40.299
SRR3591708Shoot apex72.910
SRR3591709Stem89.612
SRR3591710White floral bud84.895
SRR3591711White flower88.670
SRR3591712Green floral bud117.005
SRR3591713Yellow flower80.421
SRP173429 SRR8316895Juvenile bud stage 64.496
SRR8316896Juvenile bud stage 97.885
SRR8316897Juvenile bud stage 54.275
SRR8316894Third green stage 40.003
SRR8316900Third green stage 140.749
SRR8316901Third green stage 121.264
SRR8316898Complete white stage 58.277
SRR8316899Complete white stage 134.717
SRR8316903Complete white stage 76.274
SRR8316902Silver flowering stage47.824
SRR8316904Silver flowering stage59.067
SRR8316905Silver flowering stage29.044
SRR8316906Gold flowering stage 92.592
SRR8316907Gold flowering stage 101.321
SRR8316908Gold flowering stage 86.920
SRP132670SRR6706286Control96.902
SRR6706287Light intensity 50%103.611
SRR6706288Light intensity 20%115.355
CNP0000432CNS0095592Slightly white alabastrum(diploid) 179.227
CNS0095593Slightly white alabastrum(diploid) 2103.647
CNS0095594Slightly white alabastrum(diploid) 382.266
CNS0095595Whole white alabastrum(diploid) 287.361
CNS0095596Whole white alabastrum(diploid) 387.400
CNS0095597Whole white alabastrum(diploid) 474.684
CNS0095598Silvery flower (diploied) 153.178
CNS0095599Silvery flower (diploied) 263.977
CNS0095600Silvery flower (diploied) 390.228
CNS0095601Golden flower (diploid) 156.450
CNS0095602Golden flower (diploid) 271.469
CNS0095603Golden flower (diploid) 368.832
CNS0095604Slightly white alabastrum(tetraploid) 196.019
CNS0095605Slightly white alabastrum(tetraploid) 283.724
CNS0095606Slightly white alabastrum(tetraploid) 3115.446
CNS0095607Whole white alabastrum(tetraploid) 182.156
CNS0095608Whole white alabastrum(tetraploid) 276.412
CNS0095609Whole white alabastrum(tetraploid) 3129.514
CNS0095610Silvery flower (tetraploid) 182.680
CNS0095611Silvery flower (tetraploid) 280.472
CNS0095612Silvery flower (tetraploid) 379.993
CNS0095613Golden flower (tetraploid) 141.349
CNS0095614Golden flower (tetraploid) 263.517
CNS0095615Golden flower (tetraploid) 329.584
CRA001975CRR073297Stem 182.884
CRR073298Stem 278.629
CRR073299Stem 384.246
CRR073300Leaf 1110.404
CRR073301Leaf 2107.484
CRR073302Leaf 3114.103
CRR073303Juvenile bud 1128.085
CRR073304Juvenile bud 2105.587
CRR073305Juvenile bud 3142.385
CRR073306Third green 173.718
CRR073307Third green 274.195
CRR073308Third green 361.524
CRR073309Second white 195.035
CRR073310Second white 261.635
CRR073311Second white 359.823
CRR073312Silver flowering 160.522
CRR073313Silver flowering 268.128
CRR073314Silver flowering 359.268
CRR073315Gold flowering 141.111
CRR073316Gold flowering 243.174
CRR073317Gold flowering 336.207
CRR073318Tawny withering 178.558
CRR073319Tawny withering 269.368
CRR073320Tawny withering 394.117