Gene detail

Detail information of GWHGAAZE002367

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269696.2	0	PREDICTED: probable WRKY transcription factor 31 [Vitis vinifera]
Swissprot	tr\|Q9C519\|WRKY6_ARATH	5E-142	WRKY transcription factor 6
trEMBL	tr\|F6HIC7\|F6HIC7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51973.1}
TAIR10	AT1G62300.1	4E-99	WRKY family transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	76965784	76968340	-
GWHAAZE00000001	mRNA	76965784	76968340	-
GWHAAZE00000001	exon	76965784	76965834	-
GWHAAZE00000001	exon	76966196	76966828	-
GWHAAZE00000001	exon	76967001	76967114	-
GWHAAZE00000001	exon	76967207	76967698	-
GWHAAZE00000001	exon	76967772	76967864	-
GWHAAZE00000001	exon	76967957	76968340	-
GWHAAZE00000001	CDS	76967957	76968340	-
GWHAAZE00000001	CDS	76967772	76967864	-
GWHAAZE00000001	CDS	76967207	76967698	-
GWHAAZE00000001	CDS	76967001	76967114	-
GWHAAZE00000001	CDS	76966196	76966828	-
GWHAAZE00000001	CDS	76965784	76965834	-

Transcript Sequence
>GWHTAAZE002371 ATGGCTAGAAGAAGTGGACTCTCCATTGATACAACAACAGATCCAATCCATTTCTTTCAACACAAACACAAACCAACCACAGTAATAATCAATTCATTTCTTGACCAGCACCACCACCAGCACCACCACCACCACCACCAGCGCCAGCGGAGCGACGACGCGCCCATGGACACCACAAGGTCTTCCCCATCAACTATACAATTCGGAGTTAACCTCAACTCCACACATGATAACGATCCAGACCATCCTCAACCGTCCGATGACAACCGTACGGTCATCGACGAGATGGACTTCTTCGCTCACAAAAATTTGGATACCGACCCAACCAACAATAATAGTAATGATAATTTAGCTGGACCGGTCGAATACAATCTCAACGTTAACACCGGTTTGCATTTAGCAAATACTAGCAGCGATCAGTCCATAGTGGACGATGGAATTTCGCCCAACTCTGACGATAAAAAAGCTAAAAACAAGATAGCGGTTGTTCAAGCCGAATTGGAGCGAATGAACACAGAGAATCAACGGTTGAGAGACACGCTGAATCAATTAACAAACAATTACAATACGCTTCAAATGCATCTAAAGACATTGATTCGACAGAAGCAAGAGGAAGAAGATGATGAGAAAATTGTCAAAGTTGAGGAGAGAGAAACTAATAATGGAGGATTAATTGTGCCGAGGAGATTTATGGATCTAGGCTTGGCCAGTACTGCTGAACCTGAGGACCCTTCCTTGTCCTCATCGGAGGGGCGGAGCGGTGACCGATCAAGGTCTCCGGTGAATAACGGAGAGGCTGCTTCTGGCACTGGAGGGATCGGGAGAGAGGATAGTCCGGATCAAGCGTCTCAGGTTTGGAGATCGAATAAGGTTCAAAGATTAAATTCTGTAAAACATGTTGATCAAGCTACTGAGGCCACCATTAGAAAAGCTCGAGTTTCTGTTAGAGCTCGATCCGAGGCGCCCATGATTACTGACGGATGTCAATGGCGAAAGTACGGGCAAAAGATGGCAAAGGGAAATCCGTGTCCTCGTGCGTACTACCGGTGTACCATGGCAGCCGGTTGTCCAGTTCGAAAACAGGTGCAAAGATGCGCCGAAGACAGAACCATCCTTATCACGACATACGAAGGCAACCACAACCACCCATTGCCACCAGCCGCCGTGGGAATGGCATCAACCACTTCCTCCGCGGCACGTATGCTACTCTCAGGATCTATGCCAAGTGCAGATGGGCTAATGAACTCCAATTTTCTAGCCAGAACATTACTCCCTTGCTCATCAAGCATGGCAACAATTTCAGCCTCGGCCCCATTCCCCACTGTTACATTGGACTTAACTCAAACGCCCAACAATCCCTTAGAATTACAAAGGCAAAACGGCCAATTCCAAGTCCCATTTGCGAACCCGAACCAAAACTTGGCAGCCTCATCTGCCGCTTTGCTACCTCAGATCTTCAGCCATACACTGTACAATCAGTCAAAATTTTCCGGGCTTCAAATGTCACAAGATAACCAGTCGTCAACGTTGGTGCCACCATTGAACCACCACGGGCAGCCAGGCTCGCTGGCTGACACGGTGACAGCCCTGACTGCCGACCCGAATTTTACTGCAGCTTTGGCAGCAGCAATTTCTTCAATTATTGGGGGTTCTCATCCAAACAATAATAATGGAAATGTCACCTCCATAACTACTACCAGCAATAACAATGGAAGCATGAAGCTAAGGAAATTTAATGGGGCCAGGGGGACTGAGAAAGGAGATCAA

Network for GWHGAAZE002367

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	326	383	3.10E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.693
	SRR3591706	second leaf	0.875
	SRR3591707	mature leaf	6.252
	SRR3591708	Shoot apex	0.168
	SRR3591709	Stem	3.573
	SRR3591710	White floral bud	1.553
	SRR3591711	White flower	2.448
	SRR3591712	Green floral bud	13.223
	SRR3591713	Yellow flower	9.572
SRP173429	SRR8316895	Juvenile bud stage	4.374
	SRR8316896	Juvenile bud stage	8.274
	SRR8316897	Juvenile bud stage	3.598
	SRR8316894	Third green stage	2.369
	SRR8316900	Third green stage	6.382
	SRR8316901	Third green stage	6.766
	SRR8316898	Complete white stage	0.554
	SRR8316899	Complete white stage	0.986
	SRR8316903	Complete white stage	0.533
	SRR8316902	Silver flowering stage	0.285
	SRR8316904	Silver flowering stage	0.542
	SRR8316905	Silver flowering stage	0.363
	SRR8316906	Gold flowering stage	1.660
	SRR8316907	Gold flowering stage	1.294
	SRR8316908	Gold flowering stage	0.990
SRP132670	SRR6706286	Control	7.880
	SRR6706287	Light intensity 50%	6.418
	SRR6706288	Light intensity 20%	5.561
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.068
	CNS0095593	Slightly white alabastrum(diploid) 2	3.433
	CNS0095594	Slightly white alabastrum(diploid) 3	10.125
	CNS0095595	Whole white alabastrum(diploid) 2	3.661
	CNS0095596	Whole white alabastrum(diploid) 3	3.238
	CNS0095597	Whole white alabastrum(diploid) 4	4.447
	CNS0095598	Silvery flower (diploied) 1	1.532
	CNS0095599	Silvery flower (diploied) 2	0.099
	CNS0095600	Silvery flower (diploied) 3	0.791
	CNS0095601	Golden flower (diploid) 1	0.438
	CNS0095602	Golden flower (diploid) 2	1.343
	CNS0095603	Golden flower (diploid) 3	1.233
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.987
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.435
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.861
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.278
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.220
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.752
	CNS0095610	Silvery flower (tetraploid) 1	0.621
	CNS0095611	Silvery flower (tetraploid) 2	0.392
	CNS0095612	Silvery flower (tetraploid) 3	0.326
	CNS0095613	Golden flower (tetraploid) 1	0.588
	CNS0095614	Golden flower (tetraploid) 2	1.278
	CNS0095615	Golden flower (tetraploid) 3	0.424
CRA001975	CRR073297	Stem 1	7.641
	CRR073298	Stem 2	7.801
	CRR073299	Stem 3	7.291
	CRR073300	Leaf 1	4.387
	CRR073301	Leaf 2	5.082
	CRR073302	Leaf 3	3.478
	CRR073303	Juvenile bud 1	2.375
	CRR073304	Juvenile bud 2	0.669
	CRR073305	Juvenile bud 3	0.318
	CRR073306	Third green 1	0.067
	CRR073307	Third green 2	0.174
	CRR073308	Third green 3	0.170
	CRR073309	Second white 1	0.202
	CRR073310	Second white 2	0.154
	CRR073311	Second white 3	0.399
	CRR073312	Silver flowering 1	0.411
	CRR073313	Silver flowering 2	0.543
	CRR073314	Silver flowering 3	1.501
	CRR073315	Gold flowering 1	3.040
	CRR073316	Gold flowering 2	6.504
	CRR073317	Gold flowering 3	3.657
	CRR073318	Tawny withering 1	8.858
	CRR073319	Tawny withering 2	5.427
	CRR073320	Tawny withering 3	2.927