Gene detail

Detail information of GWHGAAZE002400

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008379654.1	1.5276E-150	PREDICTED: protein polybromo-1-like [Malus domestica]
Swissprot	tr\|Q710E8\|ORC1A_ARATH	0.000000002	Origin of replication complex subunit 1A {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|V4UEZ8\|V4UEZ8_9ROSI	2E-149	Uncharacterized protein {ECO:0000313\|EMBL:ESR60861.1}
TAIR10	AT4G22140.1	1E-107	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	77923391	77927436	-
GWHAAZE00000001	mRNA	77923391	77927436	-
GWHAAZE00000001	exon	77923391	77923598	-
GWHAAZE00000001	exon	77926404	77926472	-
GWHAAZE00000001	exon	77926572	77926914	-
GWHAAZE00000001	exon	77927364	77927436	-
GWHAAZE00000001	CDS	77927364	77927436	-
GWHAAZE00000001	CDS	77926572	77926914	-
GWHAAZE00000001	CDS	77926404	77926472	-
GWHAAZE00000001	CDS	77923391	77923598	-

Transcript Sequence
>GWHTAAZE002404 ATGGCAAAGACAAAACCTGGCAAGAAAGACCTCGATTCTTACACTATCAAAGGCACCAACAAAATCGTTAGACCTGGTGATTGTGTGCTGATGCGACCATCGGACTCTGATAAGCCCCCATACGTGGCTCGAGTGGAGAAGCTCGAGGCCGATCATCGGAACAATGTTAAGGTCAGGGTCAGGTGGTACTACCGGCCGGAGGAATCTCTTGGCGGCCGGAGGCAGTTCCATGGAGCAAAAGAGCTGTTCTTGTCAGACCACTACGATGTGCAGAGTGCTCACACTATAGAGGGGAAGTGCATTGTTCACACTTTTAAGAATTACACAAAGCTTGAGAATGTTGGTGCTGAGGATTACTTTTGTCGATTTGAGTACAAAGCTTCCACTGGGGGATTTACTCCCGACCGTGTGGCAGTGTATTGCAAGTGCGAGATGCCTTATAATCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAAGACTGGTTTCATCCCTCTTGTATGGGTATGACCATTGAAGATGCAAAAAAGTTGGAACACTTTTTGTGTTCTGACTGTTCATCTGATGATGATGCCAAAAGACCTTTGAACTCATTTCCGTTATCGCCAACCGTTGATGCTAAGGTGAGATTGCCTTTTTTCTATCAGTTGGACATTAGTATAGTGCAGCATCTAAAATCGATTGTCGGTTAG

Network for GWHGAAZE002400

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01426.19	BAH	23	135	2.80E-24
PF00628.30	PHD	140	188	3.20E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003682	molecular_function	chromatin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.038
	SRR3591706	second leaf	11.074
	SRR3591707	mature leaf	10.019
	SRR3591708	Shoot apex	18.939
	SRR3591709	Stem	16.129
	SRR3591710	White floral bud	9.298
	SRR3591711	White flower	11.481
	SRR3591712	Green floral bud	11.284
	SRR3591713	Yellow flower	9.904
SRP173429	SRR8316895	Juvenile bud stage	8.107
	SRR8316896	Juvenile bud stage	12.602
	SRR8316897	Juvenile bud stage	5.895
	SRR8316894	Third green stage	4.339
	SRR8316900	Third green stage	12.223
	SRR8316901	Third green stage	9.807
	SRR8316898	Complete white stage	2.384
	SRR8316899	Complete white stage	9.509
	SRR8316903	Complete white stage	4.605
	SRR8316902	Silver flowering stage	4.468
	SRR8316904	Silver flowering stage	4.838
	SRR8316905	Silver flowering stage	2.094
	SRR8316906	Gold flowering stage	6.743
	SRR8316907	Gold flowering stage	7.774
	SRR8316908	Gold flowering stage	8.280
SRP132670	SRR6706286	Control	9.036
	SRR6706287	Light intensity 50%	9.132
	SRR6706288	Light intensity 20%	8.738
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.444
	CNS0095593	Slightly white alabastrum(diploid) 2	10.870
	CNS0095594	Slightly white alabastrum(diploid) 3	9.546
	CNS0095595	Whole white alabastrum(diploid) 2	9.122
	CNS0095596	Whole white alabastrum(diploid) 3	7.207
	CNS0095597	Whole white alabastrum(diploid) 4	6.351
	CNS0095598	Silvery flower (diploied) 1	13.331
	CNS0095599	Silvery flower (diploied) 2	12.396
	CNS0095600	Silvery flower (diploied) 3	10.481
	CNS0095601	Golden flower (diploid) 1	13.619
	CNS0095602	Golden flower (diploid) 2	10.288
	CNS0095603	Golden flower (diploid) 3	11.118
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.495
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.103
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.001
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.599
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.398
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.718
	CNS0095610	Silvery flower (tetraploid) 1	10.252
	CNS0095611	Silvery flower (tetraploid) 2	10.264
	CNS0095612	Silvery flower (tetraploid) 3	7.891
	CNS0095613	Golden flower (tetraploid) 1	7.697
	CNS0095614	Golden flower (tetraploid) 2	9.934
	CNS0095615	Golden flower (tetraploid) 3	6.431
CRA001975	CRR073297	Stem 1	14.737
	CRR073298	Stem 2	12.702
	CRR073299	Stem 3	14.859
	CRR073300	Leaf 1	9.800
	CRR073301	Leaf 2	11.809
	CRR073302	Leaf 3	8.155
	CRR073303	Juvenile bud 1	13.623
	CRR073304	Juvenile bud 2	5.369
	CRR073305	Juvenile bud 3	11.275
	CRR073306	Third green 1	3.360
	CRR073307	Third green 2	2.910
	CRR073308	Third green 3	3.541
	CRR073309	Second white 1	5.476
	CRR073310	Second white 2	6.027
	CRR073311	Second white 3	5.364
	CRR073312	Silver flowering 1	5.540
	CRR073313	Silver flowering 2	7.355
	CRR073314	Silver flowering 3	4.517
	CRR073315	Gold flowering 1	9.073
	CRR073316	Gold flowering 2	9.055
	CRR073317	Gold flowering 3	7.842
	CRR073318	Tawny withering 1	12.643
	CRR073319	Tawny withering 2	10.150
	CRR073320	Tawny withering 3	14.954