Gene detail

Detail information of GWHGAAZE002411

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEM62884.1	0	ACC oxidase 5 [Actinidia deliciosa]
COG	NP_248837.1	2E-20	oxidoreductase
Swissprot	tr\|Q08507\|ACCO3_PETHY	0	1-aminocyclopropane-1-carboxylate oxidase 3
trEMBL	tr\|G3DSC3\|G3DSC3_ACTDE	0	ACC oxidase 5 {ECO:0000313\|EMBL:AEM62884.1}
TAIR10	AT1G05010.1	1E-127	ethylene-forming enzyme

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	78174418	78175842	+
GWHAAZE00000001	mRNA	78174418	78175842	+
GWHAAZE00000001	exon	78174418	78174522	+
GWHAAZE00000001	exon	78174692	78174918	+
GWHAAZE00000001	exon	78175033	78175339	+
GWHAAZE00000001	exon	78175552	78175842	+
GWHAAZE00000001	CDS	78174418	78174522	+
GWHAAZE00000001	CDS	78174692	78174918	+
GWHAAZE00000001	CDS	78175033	78175339	+
GWHAAZE00000001	CDS	78175552	78175842	+

Transcript Sequence
>GWHTAAZE002415 ATGGAGAACTTCCCAGTGATTAACATGGAGAAGCTCAATGGTGAAGAGAGAGGAGCAACAATGGAGAGCATCAAAGATGCTTGTGAGAACTGGGGTTTCTTTGAGTTGATGAACCATGGAATTTCACACGAGCTAATGGACACGGTGGAAAGATTGACAAAGGATCACTACAAGAAGTGCATGGAGCAGAGGTTTAAGGAATTGGTAGCAAGCAAGGCGCTAGAGGGTGTACAAGCCGAAGTTACCGATATGGATTGGGAGAGTACTTTCTTCTTGCGCCATCTACCTAGTTCAAACATCTCAGAAGTACCCGATCTGAACGACGAGTACAGAAAGGTGATGAGGGAGTTTGCAAAGAAACTTGAGATACTAGCAGAAGAGCTTCTTGATTTGCTTTGTGAGAATCTTGGATTAGAGAAAGGCTACTTGAAGAAGGCATTTTATGGGTCGAAGGGTCCGAATTTCGGTACTAAGGTTAGCAACTACCCACCATGTCCCAACCCGGAATTGATCAAAGGACTGAGAGCTCACACTGATGCCGGTGGCATTATCTTGCTCTTCCAAGACGATAAGGTCAGCGGACTCCAGCTCCTCAAGGATGGCGAGTGGGTCGATGTTCCACCAATGCGCCATTCCATTGTGATCACTAATGGAAAGTACAAGAGTGTGCTGCACAGAGTCATTGCCCAAACAGATGGGAACAGGATGTCACTTGCTTCGTTCTACAACCCAGGAAGTGATGCGGTGATTTATCCAGCACCAGAATTGGTGGAGAAAGAAGTGCTGAAAGATCAAGTGTACCCGAAGTTCGTGTTTGATGACTACATGAAGCTATATGCAGGGCTTAAGTTCCAGGCCAAGGAGCCAAGATTTGAAGCCATGAAAGCTGTTGAAGCTAGTGTCAGTTTGGGTCCAATTGCAACAGCTTAG

Network for GWHGAAZE002411

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	5	95	2.50E-13
PF03171.21	2OG-FeII_Oxy	159	244	3.80E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05933	E1.14.17.4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1601.349
	SRR3591706	second leaf	1553.370
	SRR3591707	mature leaf	2030.562
	SRR3591708	Shoot apex	842.165
	SRR3591709	Stem	561.646
	SRR3591710	White floral bud	1297.358
	SRR3591711	White flower	1170.821
	SRR3591712	Green floral bud	1076.755
	SRR3591713	Yellow flower	599.563
SRP173429	SRR8316895	Juvenile bud stage	772.865
	SRR8316896	Juvenile bud stage	1068.823
	SRR8316897	Juvenile bud stage	755.256
	SRR8316894	Third green stage	584.937
	SRR8316900	Third green stage	1720.938
	SRR8316901	Third green stage	1666.635
	SRR8316898	Complete white stage	874.853
	SRR8316899	Complete white stage	2432.736
	SRR8316903	Complete white stage	1588.503
	SRR8316902	Silver flowering stage	336.688
	SRR8316904	Silver flowering stage	753.660
	SRR8316905	Silver flowering stage	304.944
	SRR8316906	Gold flowering stage	803.423
	SRR8316907	Gold flowering stage	676.245
	SRR8316908	Gold flowering stage	1752.171
SRP132670	SRR6706286	Control	1777.058
	SRR6706287	Light intensity 50%	1741.674
	SRR6706288	Light intensity 20%	1713.188
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1561.813
	CNS0095593	Slightly white alabastrum(diploid) 2	1115.087
	CNS0095594	Slightly white alabastrum(diploid) 3	1089.503
	CNS0095595	Whole white alabastrum(diploid) 2	1098.712
	CNS0095596	Whole white alabastrum(diploid) 3	1570.886
	CNS0095597	Whole white alabastrum(diploid) 4	1310.002
	CNS0095598	Silvery flower (diploied) 1	653.809
	CNS0095599	Silvery flower (diploied) 2	542.332
	CNS0095600	Silvery flower (diploied) 3	1108.131
	CNS0095601	Golden flower (diploid) 1	600.213
	CNS0095602	Golden flower (diploid) 2	621.945
	CNS0095603	Golden flower (diploid) 3	594.318
	CNS0095604	Slightly white alabastrum(tetraploid) 1	908.508
	CNS0095605	Slightly white alabastrum(tetraploid) 2	859.413
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1340.323
	CNS0095607	Whole white alabastrum(tetraploid) 1	449.452
	CNS0095608	Whole white alabastrum(tetraploid) 2	630.380
	CNS0095609	Whole white alabastrum(tetraploid) 3	1331.211
	CNS0095610	Silvery flower (tetraploid) 1	1275.110
	CNS0095611	Silvery flower (tetraploid) 2	1070.700
	CNS0095612	Silvery flower (tetraploid) 3	349.242
	CNS0095613	Golden flower (tetraploid) 1	385.645
	CNS0095614	Golden flower (tetraploid) 2	1286.718
	CNS0095615	Golden flower (tetraploid) 3	599.595
CRA001975	CRR073297	Stem 1	2011.663
	CRR073298	Stem 2	1880.552
	CRR073299	Stem 3	2135.526
	CRR073300	Leaf 1	2035.741
	CRR073301	Leaf 2	2077.503
	CRR073302	Leaf 3	2178.525
	CRR073303	Juvenile bud 1	2770.800
	CRR073304	Juvenile bud 2	2096.335
	CRR073305	Juvenile bud 3	2537.671
	CRR073306	Third green 1	326.243
	CRR073307	Third green 2	767.834
	CRR073308	Third green 3	684.870
	CRR073309	Second white 1	68.740
	CRR073310	Second white 2	96.848
	CRR073311	Second white 3	41.100
	CRR073312	Silver flowering 1	118.285
	CRR073313	Silver flowering 2	110.724
	CRR073314	Silver flowering 3	144.717
	CRR073315	Gold flowering 1	1959.834
	CRR073316	Gold flowering 2	2691.294
	CRR073317	Gold flowering 3	1643.530
	CRR073318	Tawny withering 1	423.493
	CRR073319	Tawny withering 2	623.888
	CRR073320	Tawny withering 3	422.216