Detail information of GWHGAAZE002415


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001234047.10COP1 homolog [Solanum lycopersicum]
COGYP_001865660.16E-14hypothetical protein Npun_R2098
Swissprottr|P43254|COP1_ARATH0E3 ubiquitin-protein ligase COP1
trEMBLtr|Q9ZTV4|Q9ZTV4_SOLLC0COP1 homolog {ECO:0000313|EMBL:AAC98912.1}
TAIR10AT2G32950.10Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7828013978297946-
GWHAAZE00000001mRNA7828013978297946-
GWHAAZE00000001exon7829763278297946-
GWHAAZE00000001exon7829563578295712-
GWHAAZE00000001exon7828854678288701-
GWHAAZE00000001exon7828666578287024-
GWHAAZE00000001exon7828483178284988-
GWHAAZE00000001exon7828465878284723-
GWHAAZE00000001exon7828427978284357-
GWHAAZE00000001exon7828380278283957-
GWHAAZE00000001exon7828328678283384-
GWHAAZE00000001exon7828164678281825-
GWHAAZE00000001exon7828078878280898-
GWHAAZE00000001exon7828013978280309-
GWHAAZE00000001CDS7829763278297946-
GWHAAZE00000001CDS7829563578295712-
GWHAAZE00000001CDS7828854678288701-
GWHAAZE00000001CDS7828666578287024-
GWHAAZE00000001CDS7828483178284988-
GWHAAZE00000001CDS7828465878284723-
GWHAAZE00000001CDS7828427978284357-
GWHAAZE00000001CDS7828380278283957-
GWHAAZE00000001CDS7828328678283384-
GWHAAZE00000001CDS7828164678281825-
GWHAAZE00000001CDS7828078878280898-
GWHAAZE00000001CDS7828013978280309-
Transcript Sequence

Network for GWHGAAZE002415

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13923.7zf-C3HC4_251882.30E-09
PF00400.33WD405075433.30E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K10143RFWD2, COP1 Ubiquitin mediated proteolysis map04120
p53 signaling pathwaymap04115
Circadian rhythm - plantmap04712

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.802
SRR3591706second leaf22.160
SRR3591707mature leaf21.838
SRR3591708Shoot apex25.046
SRR3591709Stem27.530
SRR3591710White floral bud26.747
SRR3591711White flower19.602
SRR3591712Green floral bud23.781
SRR3591713Yellow flower25.485
SRP173429 SRR8316895Juvenile bud stage 12.174
SRR8316896Juvenile bud stage 16.957
SRR8316897Juvenile bud stage 8.985
SRR8316894Third green stage 8.664
SRR8316900Third green stage 20.610
SRR8316901Third green stage 19.823
SRR8316898Complete white stage 10.477
SRR8316899Complete white stage 31.033
SRR8316903Complete white stage 18.711
SRR8316902Silver flowering stage9.194
SRR8316904Silver flowering stage13.006
SRR8316905Silver flowering stage5.549
SRR8316906Gold flowering stage 21.418
SRR8316907Gold flowering stage 18.830
SRR8316908Gold flowering stage 20.430
SRP132670SRR6706286Control25.497
SRR6706287Light intensity 50%27.447
SRR6706288Light intensity 20%26.329
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.382
CNS0095593Slightly white alabastrum(diploid) 214.378
CNS0095594Slightly white alabastrum(diploid) 311.199
CNS0095595Whole white alabastrum(diploid) 215.140
CNS0095596Whole white alabastrum(diploid) 314.005
CNS0095597Whole white alabastrum(diploid) 413.926
CNS0095598Silvery flower (diploied) 114.211
CNS0095599Silvery flower (diploied) 213.085
CNS0095600Silvery flower (diploied) 320.311
CNS0095601Golden flower (diploid) 114.528
CNS0095602Golden flower (diploid) 222.286
CNS0095603Golden flower (diploid) 319.165
CNS0095604Slightly white alabastrum(tetraploid) 117.128
CNS0095605Slightly white alabastrum(tetraploid) 216.215
CNS0095606Slightly white alabastrum(tetraploid) 325.699
CNS0095607Whole white alabastrum(tetraploid) 115.839
CNS0095608Whole white alabastrum(tetraploid) 214.759
CNS0095609Whole white alabastrum(tetraploid) 322.996
CNS0095610Silvery flower (tetraploid) 131.596
CNS0095611Silvery flower (tetraploid) 237.884
CNS0095612Silvery flower (tetraploid) 322.975
CNS0095613Golden flower (tetraploid) 121.125
CNS0095614Golden flower (tetraploid) 230.745
CNS0095615Golden flower (tetraploid) 333.113
CRA001975CRR073297Stem 124.363
CRR073298Stem 217.766
CRR073299Stem 314.179
CRR073300Leaf 121.993
CRR073301Leaf 219.928
CRR073302Leaf 315.769
CRR073303Juvenile bud 115.758
CRR073304Juvenile bud 213.089
CRR073305Juvenile bud 320.755
CRR073306Third green 16.335
CRR073307Third green 27.359
CRR073308Third green 37.750
CRR073309Second white 15.564
CRR073310Second white 28.714
CRR073311Second white 39.738
CRR073312Silver flowering 19.325
CRR073313Silver flowering 26.927
CRR073314Silver flowering 36.375
CRR073315Gold flowering 19.551
CRR073316Gold flowering 218.757
CRR073317Gold flowering 38.997
CRR073318Tawny withering 116.101
CRR073319Tawny withering 211.754
CRR073320Tawny withering 316.089