Gene detail

Detail information of GWHGAAZE002416

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011100483.1	PREDICTED: protein argonaute 16 isoform X2 [Sesamum indicum]
Swissprot	tr\|Q6YSJ5\|AGO16_ORYSJ	Protein argonaute 16
trEMBL	tr\|V4U9S7\|V4U9S7_9ROSI	Protein argonaute {ECO:0000256\|RuleBase:RU361178}
TAIR10	AT2G27040.2	Argonaute family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	78357638	78368710	+
GWHAAZE00000001	mRNA	78357638	78368710	+
GWHAAZE00000001	exon	78357638	78357856	+
GWHAAZE00000001	exon	78357941	78358146	+
GWHAAZE00000001	exon	78358231	78358440	+
GWHAAZE00000001	exon	78359086	78359222	+
GWHAAZE00000001	exon	78359314	78359405	+
GWHAAZE00000001	exon	78359485	78359582	+
GWHAAZE00000001	exon	78359670	78359838	+
GWHAAZE00000001	exon	78359937	78360044	+
GWHAAZE00000001	exon	78360131	78360238	+
GWHAAZE00000001	exon	78360585	78360647	+
GWHAAZE00000001	exon	78360786	78360899	+
GWHAAZE00000001	exon	78361036	78361201	+
GWHAAZE00000001	exon	78361373	78361485	+
GWHAAZE00000001	exon	78361581	78361718	+
GWHAAZE00000001	exon	78362335	78362465	+
GWHAAZE00000001	exon	78362602	78362667	+
GWHAAZE00000001	exon	78362951	78363014	+
GWHAAZE00000001	exon	78366714	78366825	+
GWHAAZE00000001	exon	78366909	78366982	+
GWHAAZE00000001	exon	78367541	78367635	+
GWHAAZE00000001	exon	78367729	78367760	+
GWHAAZE00000001	exon	78368259	78368710	+
GWHAAZE00000001	CDS	78357638	78357856	+
GWHAAZE00000001	CDS	78357941	78358146	+
GWHAAZE00000001	CDS	78358231	78358440	+
GWHAAZE00000001	CDS	78359086	78359222	+
GWHAAZE00000001	CDS	78359314	78359405	+
GWHAAZE00000001	CDS	78359485	78359582	+
GWHAAZE00000001	CDS	78359670	78359838	+
GWHAAZE00000001	CDS	78359937	78360044	+
GWHAAZE00000001	CDS	78360131	78360238	+
GWHAAZE00000001	CDS	78360585	78360647	+
GWHAAZE00000001	CDS	78360786	78360899	+
GWHAAZE00000001	CDS	78361036	78361201	+
GWHAAZE00000001	CDS	78361373	78361485	+
GWHAAZE00000001	CDS	78361581	78361718	+
GWHAAZE00000001	CDS	78362335	78362465	+
GWHAAZE00000001	CDS	78362602	78362667	+
GWHAAZE00000001	CDS	78362951	78363014	+
GWHAAZE00000001	CDS	78366714	78366825	+
GWHAAZE00000001	CDS	78366909	78366982	+
GWHAAZE00000001	CDS	78367541	78367635	+
GWHAAZE00000001	CDS	78367729	78367760	+
GWHAAZE00000001	CDS	78368259	78368434	+
GWHAAZE00000001	three_prime_UTR	78368435	78368710	+

Transcript Sequence
>GWHTAAZE002420 ATGGAGAAAGCAGCTGAGGAGGACGCAATAGGGTCTCCACTTTCGCTTCAGTCTCCAGTAGTTATACCGTCCACTGTGAAACCAGAAGGAGTGGACCCTCCTAAGCGTTCTATTATTAGTAGGCCTGGGGTTGGAAGTGCTGGACGACGAATTAATTTGCTTGTGAATCACTTTAAAGTTTCTATCAGAAATCCAAATGAGATATTTTATCAGTATAGTGTTTCAATTAGTTATGAAGATAAGAAAACTGTTGAAAACAAGGGAATCGGGAGAAAAATCATTGATACGCTTTACCAAACATACTCTTCTGAATTTGCTGGGAAGAATTTTGCATATGATGGAGAAAAAAGTTTGTATACAGTCGGGCCTCTCCCACAAAATAAGTTTGAATTCACAGTGGTGCTAGAGGAGTCGTTTGCAAGACGTGGGAGCCCTTCGCAAAATGGAAGTCCCGGTGAGCCCATTAAGAGGTCAAGGCGTTCTTTACAGTCAAAAACTTTCATAGTAGAAATAAGCTATGCTGCTAAAATACCCTTAAAGTCTGTTTCTCATGCCCTCCAAGGTGATGAGGTGGAAAATGTTCAAGATTCACTGAGGGTGCTTGATATTATATTGAGACAGCAAGCAGCTAATAGGGGGTGCCTTTTGGTTAGACAGTCATTTTTTCATGATGACTCAAGGAACTTTACTGATGTTGGAGGGGGTGTAACTGGGTGTCGGGGTTTCCATTCCAGCTTTCGTCCCACCCATGGGGGTTTGTCGCTGAATATGGATGTATCAACCACTATGATCCTGACACCTGGACCTGTCATTGATTTTCTTAAAGCCAACCAGAATGCACGGGATCCAGGTTCTATTGACTGGGCCAAGAAAATGTTGAAAAAGATGAGGGTTAAGACAAGGCACAGCAACATGGAATTCAAGATCAGTGGGTTGAGCGAAAAGCCTTGCAACCAGCAGTTGTTCCCATTGAAAGTGAAAAACGGTGACGGTGCATATGATGGAGAAACTATTGAGATTACAGTGTTCGAGTATTTTACTAAACACCGTAACATAGAACTTACTTATTCTGCATTCATGCCGTGCCTCGATGTTGGTAAACCAAAGCGCCCGAACTATCTACCGCTGGAGCTCTGTTCTCTGGTCTCTCTACAACGATATACAAAGGCATTATCTTCAGTGCAGAGAGCATCTTTAGTTGAAAAGTCGAGGCAAAAGCCTCCAGAGAGAATACGAGTTGCTTTGAGAAGCTATCGTTATGATGAGGACCCTCTCCTTGTTGCTTGTGGCATTTCAATTGATAAACAGCTTACTCAAGTTGATGGTCGAGTCCTAGAGGCACCCAAGCTGAAGGTTGGTAGAAGTGAAGATTGTGTCCCTCGTAATGGGAGATGGAACTTTAATAATAAGCACCTTCTGAGCCCAACAAGAATAGAACGCTGGGCACTTGTCAATTTCTCTGCTCGATGTGATTCAAGTTATCTTTCTCGGGAGCTTATTAATTGCGGGAGGAATAAGGGCATTCATATTGAACGTCCATTTACACTTATTGAGGAAGATGCACAATCTAGAAGAGCTGGTCCTGTTGCACGAGTAGAAAAAATGTCTGAACAGATTATGGCAAGGCTACCTGGCCCCCCTCAATTTCTTCTTTGTGTTTTGGCAGAGAAAAAAAATTCTGACATATATGGACCTTGGAAGAAAAAATGTCTGACTGAACTTGGAATTGCCACGCAATGTATGTCCCCTTCTAAGATCAATGATCAATATCTTACGAATGTGCTGCTGAAAATTAATTCCAAGCTTGGAGGGACTAATTCTTTGTTGGCAATTGAGCTCTCCTCTTCCATCCCCTTGATAAAAGACACTCCTACAATGATATTGGGGATGGATGTATCTCATGGATCTCCTGGCCGATCAGATATCCCTTCTATTGCCGCGGTTGTTGGATCTCGATCTTGGCCTCTAGTATCGAGATATAGAGCTGCTGTGCGAACACAATCATCAAAGGTGGAAATGATTGAATCTTTGTACAAACCATTAGCAAATGGGGAAGATGATGGCATCATGAGGGAATTACTTATGGATTTCTATGAGACCAGCAATGGACGCAAACCATCTCAGATAATTGTTTTCAGGGATGGAGTGAGCGAGTCACAGTTTAATCAAGTTTTGAACATTGAGCTGGATCAAATGATAAAGGCTTACCAGCATCTTGGGGAGGCAAACATTCCCAAATTCACAGTGATTGTAGCTCAAAAAAATCACCACACAAAGCTATTTCAAGCTGGTGCACCCGAAAATGTCCCACCTGGTACTGTTGTTGACACGAAAATTGTGCACCCGAAAAACTATGATTTTTACATGTGCGCTCAAGCAGGGATGATAGGAACTTCTCGTCCGGCCCACTATCATGTCTTGTATGACGAGATTGGCTTCTCTCCGGATAACCTGCAAAATCTCATACATTCACTATCATACGTGTATCAAAGGAGCACTACTGCAATCTCAATTGTCGCTCCCATCTGTTACGCTCACCTTGCAGCCTCACAGATGGGTCAGTTTATCAAATTTGAGGATATGTCGGAAACCAATTCGGAACGTAGAAGCCTCACCACAGGAGGGAATGTTGCTGTTCCTGAACTGCCCAGGTTACATGATGATGTGGTGGGATCGATGTTCTTTTGTTGATATTATATTTTTTGGAACCCAGACGTTTATCTAGTTCATTTGAAATCTGTAAATGCTTTGCTGGTAGTATAGTACACGGGGTGACCCAATTTTTCTCACATTGTAGAGGGGTTGGAGAAATAGGTAAAACTCATTAAGACGAAGAAACTCTGGGATTAGGTTTTTGTGCAATTTTTTGGTGTTCCATATGCTGCCGATGAAAGGACTAGTTATTATTTCAGAATTTCTATGCATGCTCCTCCCAATTTTGATGGGGCCTATTTTTTGGGTGAGAAA

Network for GWHGAAZE002416

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16486.6	ArgoN	49	205	2.00E-28
PF08699.11	ArgoL1	217	264	2.30E-16
PF02170.23	PAZ	272	399	1.70E-24
PF16488.6	ArgoL2	411	451	4.10E-12
PF02171.18	Piwi	550	857	3.30E-107

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11593	ELF2C, AGO	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.341
	SRR3591706	second leaf	12.589
	SRR3591707	mature leaf	8.765
	SRR3591708	Shoot apex	28.922
	SRR3591709	Stem	13.861
	SRR3591710	White floral bud	9.726
	SRR3591711	White flower	16.086
	SRR3591712	Green floral bud	11.933
	SRR3591713	Yellow flower	9.938
SRP173429	SRR8316895	Juvenile bud stage	12.141
	SRR8316896	Juvenile bud stage	15.540
	SRR8316897	Juvenile bud stage	6.887
	SRR8316894	Third green stage	6.427
	SRR8316900	Third green stage	11.943
	SRR8316901	Third green stage	10.776
	SRR8316898	Complete white stage	2.185
	SRR8316899	Complete white stage	13.680
	SRR8316903	Complete white stage	4.408
	SRR8316902	Silver flowering stage	2.865
	SRR8316904	Silver flowering stage	3.502
	SRR8316905	Silver flowering stage	1.775
	SRR8316906	Gold flowering stage	4.882
	SRR8316907	Gold flowering stage	6.676
	SRR8316908	Gold flowering stage	6.076
SRP132670	SRR6706286	Control	11.549
	SRR6706287	Light intensity 50%	11.945
	SRR6706288	Light intensity 20%	11.588
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.562
	CNS0095593	Slightly white alabastrum(diploid) 2	11.183
	CNS0095594	Slightly white alabastrum(diploid) 3	10.802
	CNS0095595	Whole white alabastrum(diploid) 2	9.256
	CNS0095596	Whole white alabastrum(diploid) 3	6.764
	CNS0095597	Whole white alabastrum(diploid) 4	8.670
	CNS0095598	Silvery flower (diploied) 1	15.565
	CNS0095599	Silvery flower (diploied) 2	12.475
	CNS0095600	Silvery flower (diploied) 3	5.387
	CNS0095601	Golden flower (diploid) 1	12.201
	CNS0095602	Golden flower (diploid) 2	7.253
	CNS0095603	Golden flower (diploid) 3	6.196
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.752
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.508
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.376
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.716
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.090
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.837
	CNS0095610	Silvery flower (tetraploid) 1	9.629
	CNS0095611	Silvery flower (tetraploid) 2	8.541
	CNS0095612	Silvery flower (tetraploid) 3	6.170
	CNS0095613	Golden flower (tetraploid) 1	3.971
	CNS0095614	Golden flower (tetraploid) 2	7.280
	CNS0095615	Golden flower (tetraploid) 3	2.024
CRA001975	CRR073297	Stem 1	15.360
	CRR073298	Stem 2	12.566
	CRR073299	Stem 3	7.409
	CRR073300	Leaf 1	12.217
	CRR073301	Leaf 2	10.789
	CRR073302	Leaf 3	6.125
	CRR073303	Juvenile bud 1	6.092
	CRR073304	Juvenile bud 2	2.363
	CRR073305	Juvenile bud 3	6.977
	CRR073306	Third green 1	0.461
	CRR073307	Third green 2	0.707
	CRR073308	Third green 3	0.306
	CRR073309	Second white 1	0.965
	CRR073310	Second white 2	1.261
	CRR073311	Second white 3	1.029
	CRR073312	Silver flowering 1	0.918
	CRR073313	Silver flowering 2	0.836
	CRR073314	Silver flowering 3	1.006
	CRR073315	Gold flowering 1	2.768
	CRR073316	Gold flowering 2	7.102
	CRR073317	Gold flowering 3	3.540
	CRR073318	Tawny withering 1	7.765
	CRR073319	Tawny withering 2	10.604
	CRR073320	Tawny withering 3	8.228