Gene detail

Detail information of GWHGAAZE002419

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO59566.1	0	hypothetical protein CISIN_1g044196mg [Citrus sinensis]
COG	YP_007204765.1	2E-11	lysophospholipase
Swissprot	tr\|Q67ZU1\|LIP2_ARATH	2E-151	Triacylglycerol lipase 2 (Precursor)
trEMBL	tr\|A0A067F8N6\|A0A067F8N6_CITSI	0	Lipase {ECO:0000256\|PIRNR:PIRNR000862}
TAIR10	AT5G14180.1	2E-123	Myzus persicae-induced lipase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	78393916	78396596	+
GWHAAZE00000001	mRNA	78393916	78396596	+
GWHAAZE00000001	exon	78393916	78394068	+
GWHAAZE00000001	exon	78394165	78394272	+
GWHAAZE00000001	exon	78394427	78394567	+
GWHAAZE00000001	exon	78394691	78394801	+
GWHAAZE00000001	exon	78395135	78395278	+
GWHAAZE00000001	exon	78395414	78395454	+
GWHAAZE00000001	exon	78395726	78395805	+
GWHAAZE00000001	exon	78395891	78395986	+
GWHAAZE00000001	exon	78396277	78396596	+
GWHAAZE00000001	CDS	78393916	78394068	+
GWHAAZE00000001	CDS	78394165	78394272	+
GWHAAZE00000001	CDS	78394427	78394567	+
GWHAAZE00000001	CDS	78394691	78394801	+
GWHAAZE00000001	CDS	78395135	78395278	+
GWHAAZE00000001	CDS	78395414	78395454	+
GWHAAZE00000001	CDS	78395726	78395805	+
GWHAAZE00000001	CDS	78395891	78395986	+
GWHAAZE00000001	CDS	78396277	78396596	+

Transcript Sequence
>GWHTAAZE002423 ATGGCTAACGCAATAATCAGTTTAGTTTTAGTAGTTATATTCTGTGTCTCAGCAGGAGAAGCAAGAAGGAAAGTTTACAAGATCAACGGTCAAGATGGCGGCATTTGCAAATCTATGGTGGTGACACAAGGCTATGTTTGTGAAGAACACACTGTAACAACCGATGATGGGTATATTCTCAGTTTGCAAAGGATTCCGGTGAGCAGGTCAGGCAAAAAATCCGACAAGCCTCCTGTTCTTTTACAACATGGCCTCCTCATGGATGGGGCAACGTGGGTGTTGAATTCTCCTGATGAGTCTCTAGGGTTCATTTTGGCCGATAACGGGTTTGATGTTTGGTTAGCCAATACTCGAGGAACTAATTATAGCCGCGGACACACATCGCTTAGTCCTAGCGACCCGGCTTATTGGGATTGGTCTTGGGATGAATTAGTGGCTTATGATCTCCCCGCTACAGTCAAACATGTTCATGATAAAACAGGGCAAAACTTGCACTATGTTGGCCATTCTTTGGGAACTTTGATAGCTTTTGCAGCATTCTCGCAACACAAGGTGATGGAAATGTTAAGATCAGCAGCTTTGCTTAGCCCAATTGCTTATTTGGGTCAAATGCCATCTCCTCTTGCTAGAGCTGGTGCTGATTCGTTTTTAGCTGAAGACTTGTACTGGTTGGGTCTCCACGAATTTGCTCCAAGAGGGGCAGCTGTTGAAAAACTCCTGGCAGATATTTGCAAGAAACCTAACAACAATTGTAGCGACTTAATGACTTCTTTTACTGGAAAGAATTGCTGCGTGAACTCTTCTCAGACAGATAATTTTCTTGCTCATGAACCTCAATCTACCGCGACAAAGAACATGATCCATATAGCCCAGATGGTAAGAGGAGGGAGCATAGAGAAATTTGACTATGGGAATGCAGAGGAGAACAACAACCACTATGGGCAGCCAAATCCTCCAACGTACAACATGTCAAGCATACCGGACAACCTTCCCCTGTACCTCAGCTATGGTGGGGCGGACTTGTTATCTGATGTAAAGGATGTGAAGACACTACTCAATAGCCTCAAGGGACATGATTCTGATAAGCTGGTGGTGCAGTTCAGGGAGGACTATGCACATGCTGATTTTGTTTTTGGTGTTAATGCTAAGCAAGTTGTATATAATCCTCTCATGTCCTTCTTTAAGCTTCATTAA

Network for GWHGAAZE002419

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04083.17	Abhydro_lipase	39	95	6.40E-22
PF12146.9	Hydrolase_4	101	210	9.60E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01052	LIPA	Steroid biosynthesis	map00100
		Lysosome	map04142
		Cholesterol metabolism	map04979

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0016788	molecular_function	hydrolase activity, acting on ester bonds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.053
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	1.661
	SRR8316897	Juvenile bud stage	0.153
	SRR8316894	Third green stage	2.014
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.630
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.821
	SRR6706287	Light intensity 50%	1.080
	SRR6706288	Light intensity 20%	0.062
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.320
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.639
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.027
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.035
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.028
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.343
	CRR073298	Stem 2	0.679
	CRR073299	Stem 3	0.039
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.044
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.112
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.080
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000