Gene detail

Detail information of GWHGAAZE002420

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011085485.1	0	PREDICTED: protein disulfide isomerase-like 2-3 [Sesamum indicum]
COG	NP_622856.1	9E-25	thiol-disulfide isomerase
Swissprot	tr\|Q67UF5\|PDI23_ORYSJ	0	Protein disulfide isomerase-like 2-3 (Precursor)
trEMBL	tr\|G7KH66\|G7KH66_MEDTR	0	Protein disulfide isomerase-like protein {ECO:0000313\|EMBL:AES99809.1}
TAIR10	AT1G04980.1	0	PDI-like 2-2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	78407876	78411553	+
GWHAAZE00000001	mRNA	78407876	78411553	+
GWHAAZE00000001	exon	78407876	78408043	+
GWHAAZE00000001	exon	78408383	78408496	+
GWHAAZE00000001	exon	78408896	78409053	+
GWHAAZE00000001	exon	78409425	78409524	+
GWHAAZE00000001	exon	78409799	78409975	+
GWHAAZE00000001	exon	78410320	78410465	+
GWHAAZE00000001	exon	78411159	78411305	+
GWHAAZE00000001	exon	78411397	78411553	+
GWHAAZE00000001	CDS	78407876	78408043	+
GWHAAZE00000001	CDS	78408383	78408496	+
GWHAAZE00000001	CDS	78408896	78409053	+
GWHAAZE00000001	CDS	78409425	78409524	+
GWHAAZE00000001	CDS	78409799	78409975	+
GWHAAZE00000001	CDS	78410320	78410465	+
GWHAAZE00000001	CDS	78411159	78411305	+
GWHAAZE00000001	CDS	78411397	78411553	+

Transcript Sequence
>GWHTAAZE002424 ACTTTGCAGGTCTTAAATTCCAATGGGGTAGTTTTAGTTGAGTTCTTTGCACCTTGGTGTGGTCATTGTAAAGCTTTGACACCCATATGGGAAAAAACAGCTACCGTGTTGAAAGGTGTTGCAACCGTGGCAGCTCTTGATGCTGATGCTCACCAGTCGCTTGCTCAGGAATATGGGATTCAAGGATTTCCAACGATCAAGGTGTTTTCACCAGGAAAACCTCCTGTAGATTACCAAGGAGCTAGGGATGTCAAACCAATTGCAGAATTTGCAGTCCAACAGATCAAAGCACTTCTAAAGGAACGGTTGAGCGGAAAAGCCACTGGAGGATCAAGTGAGAAATCGGAACCTAGTGCATCAGTAGAATTGAATTCACGTAATTTTGATGAGCTGGTGCTTAAGAGTAAAGAGCTTTGGATTGTGGAGTTCTTTGCACCTTGGTGTGGACACTGTAAGAAGCTTGCTCCTGAGTGGAAGAAGGCTGCAAGTAACTTGAAGGGCAAGGTGAAGCTGGGTCACGTAGATTGTGATGCAGATAAGTCTCTAATGAGCAGGTTCAACGTCCAAGGATTCCCCACCATCATGGTATTTGGTGCGGACAAAGATAGCCCATTCCCCTACGAAGGCGCTAGATCTGCTTCAGCAATCGAATCATTTGCTCTAGACCAGCTGGAAACAAACGTTGCACCTCCTGAAGTGACAGAGTTGACCAGCCCAGATGTTATGGAAGAGAAATGTGGTTCAGCTGCCATATGCTTTGTTGCATTTCTCCCTGACATTTTGGACTCTAAGGCGGAGGGTAGGAACAAGTACCTCGAGCTGTTGTTATCAGTTGCCGAGAAGTTCAAAAAAAGTCCTTACAGCTACGTTTGGGCGGCTGCAGGGAATCAACCGGAACTTGAGAAGCATGTGGGAGTTGGTGGTTACGGGTATCCAGCTCTAGTGGCACTGAATGTCAAGAAAGGCGTATATGCACCTCTTCGTAGTGCTTTTGAGCGGGACCAGATTATAGAGTTTGTAAGAGAAGCTGGACACGGTGGAAAGGGCAATCTACAGTTAGACGGGGTGCCAGTTATTGTGAAGACCGGCGTTTGGGATGGTAAAGACGGGCAAATCATTGAAGAAGATGAGTTTTCTCTTGATGAACTTATGGGGGAAGAAACATGA

Network for GWHGAAZE002420

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0056

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00085.21	Thioredoxin	3	90	2.50E-26
PF00085.21	Thioredoxin	121	219	2.30E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09584	PDIA6, TXNDC7	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0045454	biological_process	cell redox homeostasis
GO:0016853	molecular_function	isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	145.269
	SRR3591706	second leaf	53.217
	SRR3591707	mature leaf	33.598
	SRR3591708	Shoot apex	87.428
	SRR3591709	Stem	49.566
	SRR3591710	White floral bud	74.465
	SRR3591711	White flower	62.736
	SRR3591712	Green floral bud	79.096
	SRR3591713	Yellow flower	182.410
SRP173429	SRR8316895	Juvenile bud stage	71.436
	SRR8316896	Juvenile bud stage	79.217
	SRR8316897	Juvenile bud stage	40.946
	SRR8316894	Third green stage	32.703
	SRR8316900	Third green stage	116.383
	SRR8316901	Third green stage	98.776
	SRR8316898	Complete white stage	51.597
	SRR8316899	Complete white stage	78.224
	SRR8316903	Complete white stage	77.323
	SRR8316902	Silver flowering stage	54.494
	SRR8316904	Silver flowering stage	84.153
	SRR8316905	Silver flowering stage	48.653
	SRR8316906	Gold flowering stage	131.209
	SRR8316907	Gold flowering stage	133.771
	SRR8316908	Gold flowering stage	96.823
SRP132670	SRR6706286	Control	102.234
	SRR6706287	Light intensity 50%	96.994
	SRR6706288	Light intensity 20%	96.444
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	116.839
	CNS0095593	Slightly white alabastrum(diploid) 2	127.665
	CNS0095594	Slightly white alabastrum(diploid) 3	118.787
	CNS0095595	Whole white alabastrum(diploid) 2	86.836
	CNS0095596	Whole white alabastrum(diploid) 3	104.930
	CNS0095597	Whole white alabastrum(diploid) 4	83.890
	CNS0095598	Silvery flower (diploied) 1	125.502
	CNS0095599	Silvery flower (diploied) 2	87.900
	CNS0095600	Silvery flower (diploied) 3	109.528
	CNS0095601	Golden flower (diploid) 1	76.399
	CNS0095602	Golden flower (diploid) 2	196.440
	CNS0095603	Golden flower (diploid) 3	194.400
	CNS0095604	Slightly white alabastrum(tetraploid) 1	98.652
	CNS0095605	Slightly white alabastrum(tetraploid) 2	94.130
	CNS0095606	Slightly white alabastrum(tetraploid) 3	136.313
	CNS0095607	Whole white alabastrum(tetraploid) 1	65.387
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.533
	CNS0095609	Whole white alabastrum(tetraploid) 3	169.625
	CNS0095610	Silvery flower (tetraploid) 1	163.550
	CNS0095611	Silvery flower (tetraploid) 2	94.962
	CNS0095612	Silvery flower (tetraploid) 3	105.678
	CNS0095613	Golden flower (tetraploid) 1	75.212
	CNS0095614	Golden flower (tetraploid) 2	129.062
	CNS0095615	Golden flower (tetraploid) 3	106.880
CRA001975	CRR073297	Stem 1	75.704
	CRR073298	Stem 2	70.993
	CRR073299	Stem 3	84.835
	CRR073300	Leaf 1	88.066
	CRR073301	Leaf 2	84.679
	CRR073302	Leaf 3	102.052
	CRR073303	Juvenile bud 1	97.132
	CRR073304	Juvenile bud 2	97.555
	CRR073305	Juvenile bud 3	84.562
	CRR073306	Third green 1	40.979
	CRR073307	Third green 2	58.652
	CRR073308	Third green 3	62.155
	CRR073309	Second white 1	76.384
	CRR073310	Second white 2	53.362
	CRR073311	Second white 3	51.373
	CRR073312	Silver flowering 1	165.909
	CRR073313	Silver flowering 2	229.204
	CRR073314	Silver flowering 3	216.305
	CRR073315	Gold flowering 1	26.463
	CRR073316	Gold flowering 2	36.590
	CRR073317	Gold flowering 3	36.184
	CRR073318	Tawny withering 1	70.140
	CRR073319	Tawny withering 2	47.928
	CRR073320	Tawny withering 3	76.258