Gene detail

Detail information of GWHGAAZE002427

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277197.1	0	PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial [Vitis vinifera]
COG	YP_006371286.1	2E-145	3-oxoacyl-ACP synthase
Swissprot	tr\|Q8L3X9\|KASM_ARATH	0	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial (Precursor)
trEMBL	tr\|D7TEG7\|D7TEG7_VITVI	0	3-oxoacyl-[acyl-carrier-protein] synthase {ECO:0000256\|PIRNR:PIRNR000447}
TAIR10	AT2G04540.1	5E-163	Beta-ketoacyl synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	78516440	78523230	+
GWHAAZE00000001	mRNA	78516440	78523230	+
GWHAAZE00000001	exon	78516440	78516572	+
GWHAAZE00000001	exon	78517337	78517566	+
GWHAAZE00000001	exon	78518437	78518544	+
GWHAAZE00000001	exon	78518618	78518689	+
GWHAAZE00000001	exon	78518878	78518964	+
GWHAAZE00000001	exon	78520347	78520498	+
GWHAAZE00000001	exon	78521171	78521251	+
GWHAAZE00000001	exon	78521346	78521379	+
GWHAAZE00000001	exon	78521596	78521662	+
GWHAAZE00000001	exon	78521764	78521840	+
GWHAAZE00000001	exon	78522349	78522409	+
GWHAAZE00000001	exon	78522528	78522610	+
GWHAAZE00000001	exon	78523159	78523230	+
GWHAAZE00000001	CDS	78516440	78516572	+
GWHAAZE00000001	CDS	78517337	78517566	+
GWHAAZE00000001	CDS	78518437	78518544	+
GWHAAZE00000001	CDS	78518618	78518689	+
GWHAAZE00000001	CDS	78518878	78518964	+
GWHAAZE00000001	CDS	78520347	78520498	+
GWHAAZE00000001	CDS	78521171	78521251	+
GWHAAZE00000001	CDS	78521346	78521379	+
GWHAAZE00000001	CDS	78521596	78521662	+
GWHAAZE00000001	CDS	78521764	78521840	+
GWHAAZE00000001	CDS	78522349	78522409	+
GWHAAZE00000001	CDS	78522528	78522610	+
GWHAAZE00000001	CDS	78523159	78523230	+

Transcript Sequence
>GWHTAAZE002431 ATGAAGAAGAATAATTGGTGTAAATTCATCCCCTCTCGTTTCCAATTCAATCGCTTTATATCATCAACCTCTCCTCGATTCCAATACTTTAATCCCCCTCCCATTGTTTCTCCTCGAAGAGTTGTTGTTACAGGTGTAGGGATGGTTACACCACTAGGTTGTGGTGTAGAGACTACGTGGAGGCGTTTAATAGAGGGGAAATGTGGAGTAAGGGAAATCTCTTCAGAAGATCTCAAGATGAACTCATTTGATAGAGATACACAGTTGCATACTTTTGATCAGTTGTCATCAAAAGTTGCTGCTGTTGTGCCATGTGGAATAAATCCGGGGGAATTTAATGGGGATTTGTGGCTCAATTCCAAGGATCATAGATCAATTGCAAGGTTCATAGGTTATGCACTATGTGCCACCGATGAAGCTCTTAGAGATGCAAACTGGGCACCCACGGCACAGGAGGAGAAGGAGAAGACGGGAGTTTCCATAGGTGGGGGAACCGGAAGCATTAGTGATATATTGGATGCATCACAACATATTTGTGAGAAGCGGCTTCGTCGGCTTAGTCCATTTTTCATCCCCCGGATACTGATCAACATGGCAGCTGGTCATGTAAGCATGAAGTATGGATTCCAGGGACCAAACCATGCTGCAGTGACAGCTTGTGCTACTGGGGCACATTCTATTGGTGATGCTTCGAGGATGATTCAATTTGGAGATGCTGATGTTATGGTGGCTGGAGGAACAGAGGCCAGCATTGATGCCTTATCTATAGCTGGGTTTTGCAGGTCAAGGGCTCTGACTACGAAATATAATTCTTCCCCTCAAGAAGCCTCTCGACCTTTTGATTGTGATAGAGATGGATTTGTAATAGGGGAAGGTTCTGGTGTTTTGGTGTTGGAGGAACTGGAACATGCAAAAAAAAGAGGAGCAAAAATTTACGCCGAACTTCGGGGTTACGGGATGTCAGGTGATGCATATCATATTACTCAACCACATAGTGATGGAAGAGGCGCCATATTGGCAATGACACGTGCTCTAAAGCAGTCTGGTCTTCATCCTAATCAAGTGGATTATATTAACGCTCATGCTACATCTACACCTCTTGGTGACGCAGTTGAAGCCACTGCCATTAAATCTGTATTCTCTGATCATGCTAAATCAGGTGCCTTGGGTTTCTCCTCCACAAAGGGTGCTATTGGTCATCTCCTTGGAGCAGCTGGTTCTGTGGAAGCAATTTTTGCTGTTCTGGCCATACACCAT

Network for GWHGAAZE002427

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00109.27	ketoacyl-synt	39	304	1.00E-55
PF02801.23	Ketoacyl-synt_C	312	419	1.90E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09458	fabF, OXSM, CEM1	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.097
	SRR3591706	second leaf	8.632
	SRR3591707	mature leaf	10.147
	SRR3591708	Shoot apex	16.796
	SRR3591709	Stem	14.966
	SRR3591710	White floral bud	8.832
	SRR3591711	White flower	12.984
	SRR3591712	Green floral bud	10.285
	SRR3591713	Yellow flower	9.924
SRP173429	SRR8316895	Juvenile bud stage	7.831
	SRR8316896	Juvenile bud stage	11.140
	SRR8316897	Juvenile bud stage	8.606
	SRR8316894	Third green stage	4.180
	SRR8316900	Third green stage	12.685
	SRR8316901	Third green stage	11.653
	SRR8316898	Complete white stage	1.641
	SRR8316899	Complete white stage	11.742
	SRR8316903	Complete white stage	2.564
	SRR8316902	Silver flowering stage	1.441
	SRR8316904	Silver flowering stage	2.360
	SRR8316905	Silver flowering stage	1.036
	SRR8316906	Gold flowering stage	3.258
	SRR8316907	Gold flowering stage	3.612
	SRR8316908	Gold flowering stage	4.967
SRP132670	SRR6706286	Control	14.304
	SRR6706287	Light intensity 50%	13.641
	SRR6706288	Light intensity 20%	14.018
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.790
	CNS0095593	Slightly white alabastrum(diploid) 2	9.378
	CNS0095594	Slightly white alabastrum(diploid) 3	7.586
	CNS0095595	Whole white alabastrum(diploid) 2	5.151
	CNS0095596	Whole white alabastrum(diploid) 3	4.685
	CNS0095597	Whole white alabastrum(diploid) 4	4.135
	CNS0095598	Silvery flower (diploied) 1	7.706
	CNS0095599	Silvery flower (diploied) 2	5.949
	CNS0095600	Silvery flower (diploied) 3	6.231
	CNS0095601	Golden flower (diploid) 1	7.186
	CNS0095602	Golden flower (diploid) 2	3.756
	CNS0095603	Golden flower (diploid) 3	4.305
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.401
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.656
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.202
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.667
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.298
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.460
	CNS0095610	Silvery flower (tetraploid) 1	9.006
	CNS0095611	Silvery flower (tetraploid) 2	8.914
	CNS0095612	Silvery flower (tetraploid) 3	6.257
	CNS0095613	Golden flower (tetraploid) 1	5.097
	CNS0095614	Golden flower (tetraploid) 2	7.681
	CNS0095615	Golden flower (tetraploid) 3	7.414
CRA001975	CRR073297	Stem 1	16.899
	CRR073298	Stem 2	13.058
	CRR073299	Stem 3	9.187
	CRR073300	Leaf 1	9.914
	CRR073301	Leaf 2	13.381
	CRR073302	Leaf 3	8.237
	CRR073303	Juvenile bud 1	5.759
	CRR073304	Juvenile bud 2	1.907
	CRR073305	Juvenile bud 3	5.169
	CRR073306	Third green 1	0.246
	CRR073307	Third green 2	0.192
	CRR073308	Third green 3	0.231
	CRR073309	Second white 1	0.313
	CRR073310	Second white 2	0.793
	CRR073311	Second white 3	0.194
	CRR073312	Silver flowering 1	0.444
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.103
	CRR073315	Gold flowering 1	4.178
	CRR073316	Gold flowering 2	6.980
	CRR073317	Gold flowering 3	2.110
	CRR073318	Tawny withering 1	7.713
	CRR073319	Tawny withering 2	9.831
	CRR073320	Tawny withering 3	6.869