Detail information of GWHGAAZE002440


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010689002.12.41043E-51PREDICTED: F-box protein At3g07870-like [Beta vulgaris subsp. vulgaris]
Swissprottr|Q9SU30|CPR30_ARATH3E-22F-box protein CPR30
trEMBLtr|V4TKH2|V4TKH2_9ROSI7E-45Uncharacterized protein {ECO:0000313|EMBL:ESR60958.1}
TAIR10AT4G12560.22E-20F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7882335578824428+
GWHAAZE00000001mRNA7882335578824428+
GWHAAZE00000001exon7882335578824428+
GWHAAZE00000001CDS7882335578824428+
Transcript Sequence

Network for GWHGAAZE002440

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box4371.20E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.115
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.139
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.076
SRP173429 SRR8316895Juvenile bud stage 0.145
SRR8316896Juvenile bud stage 0.389
SRR8316897Juvenile bud stage 0.184
SRR8316894Third green stage 0.108
SRR8316900Third green stage 1.740
SRR8316901Third green stage 0.803
SRR8316898Complete white stage 0.105
SRR8316899Complete white stage 3.147
SRR8316903Complete white stage 0.636
SRR8316902Silver flowering stage0.738
SRR8316904Silver flowering stage0.148
SRR8316905Silver flowering stage0.063
SRR8316906Gold flowering stage 0.150
SRR8316907Gold flowering stage 0.204
SRR8316908Gold flowering stage 0.582
SRP132670SRR6706286Control1.124
SRR6706287Light intensity 50%0.925
SRR6706288Light intensity 20%1.663
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.517
CNS0095593Slightly white alabastrum(diploid) 20.786
CNS0095594Slightly white alabastrum(diploid) 30.405
CNS0095595Whole white alabastrum(diploid) 20.907
CNS0095596Whole white alabastrum(diploid) 31.174
CNS0095597Whole white alabastrum(diploid) 40.777
CNS0095598Silvery flower (diploied) 10.046
CNS0095599Silvery flower (diploied) 20.109
CNS0095600Silvery flower (diploied) 30.922
CNS0095601Golden flower (diploid) 10.346
CNS0095602Golden flower (diploid) 20.487
CNS0095603Golden flower (diploid) 30.671
CNS0095604Slightly white alabastrum(tetraploid) 10.498
CNS0095605Slightly white alabastrum(tetraploid) 20.327
CNS0095606Slightly white alabastrum(tetraploid) 31.213
CNS0095607Whole white alabastrum(tetraploid) 10.189
CNS0095608Whole white alabastrum(tetraploid) 20.607
CNS0095609Whole white alabastrum(tetraploid) 30.868
CNS0095610Silvery flower (tetraploid) 11.055
CNS0095611Silvery flower (tetraploid) 20.421
CNS0095612Silvery flower (tetraploid) 30.189
CNS0095613Golden flower (tetraploid) 10.558
CNS0095614Golden flower (tetraploid) 20.550
CNS0095615Golden flower (tetraploid) 30.071
CRA001975CRR073297Stem 10.967
CRR073298Stem 20.933
CRR073299Stem 30.471
CRR073300Leaf 10.384
CRR073301Leaf 20.669
CRR073302Leaf 30.233
CRR073303Juvenile bud 11.851
CRR073304Juvenile bud 20.283
CRR073305Juvenile bud 31.738
CRR073306Third green 10.118
CRR073307Third green 20.518
CRR073308Third green 30.102
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.032
CRR073313Silver flowering 20.057
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.093
CRR073317Gold flowering 30.663
CRR073318Tawny withering 10.710
CRR073319Tawny withering 20.862
CRR073320Tawny withering 31.533