Gene detail

Detail information of GWHGAAZE002441

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010040513.1	2.2601E-165	PREDICTED: exopolygalacturonase-like [Eucalyptus grandis]
COG	YP_003391696.1	1E-25	glycoside hydrolase family 28
Swissprot	tr\|P24548\|PGLR_OENOR	1E-158	Exopolygalacturonase (Fragment)
trEMBL	tr\|A0A058ZUL9\|A0A058ZUL9_EUCGR	8E-166	Uncharacterized protein {ECO:0000313\|EMBL:KCW45154.1}
TAIR10	AT3G14040.1	2E-111	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	78826646	78827827	-
GWHAAZE00000001	mRNA	78826646	78827827	-
GWHAAZE00000001	exon	78827522	78827827	-
GWHAAZE00000001	exon	78826646	78827407	-
GWHAAZE00000001	CDS	78827522	78827827	-
GWHAAZE00000001	CDS	78826646	78827407	-

Transcript Sequence
>GWHTAAZE002445 ATGACCGCATGGAAAGAGGCATGTGCGGCACCAACTCCGAGTACAATTGTGATACCAAAAGGCACATTTTTGTTGAATCAAGTGTCAATTGAAGGTCCTTGCACGGCTCCTATAACCTTTAAGATGGAGGCCATCTTAAAGGCACCTGCCGACCCGGCTCAATTAAATCCGGATCTGGAATGGATCACTTTTAGAAACATTGACCAATTCACAATGACCGGTGGTGGTACGTTTGATGGCCAAGGAAAAACTGCTTGGGCCAATAATAATTGCAAGGCGACCGGAAAATGCAATAAACTTCCTAATAATCTTAGCTTCAATTTACTCACGAATACGGTGATCCAAGAGATAACTTCTCTCGATAGCAAGTTGTTCCACGTCAATGTGTTGGGCTGCAAGAACATAAGTTTCGTACACTTTACTATCACTGCCGCAGGGGATAGCCTTAACACAGATGGGATCCACATTGGTCGCTCAAATGGTGTCAAGATCACCGAATGTGAAATTAAAACCGGTGATGATTGTGTGTCCATTGGTGATGGCAGCCAACAGGTTACCATCGAGAAAGTAACTTGCGGACCTGGCCATGGGATCTCTGTGGGGAGCCTTGGCAAGTACCCTAAGGAGGAGCCTGTGGTTGGAATCTACGTTAGGAACTGCACTATCACTGGAACAAATAATGGTGTGAGAGTTAAGACGTGGCCGGCTTCCGAACCTGGCGAGGCCTCCGATATGCACTTTGAGGACATTATTATGAACAATGTGAGCAATCCCATCCTCATTGATCAAGAGTATTGTCCAAGTGGTCAATGCACACAACAAGTCCCTTCGAAGGTGAAGATTAGCAAAGTTAGCTTTAAGAATATAAGGGGGACATCAGCAACAATGCTTGCTGTGAAACTCGTTTGCAGTAAGAGCATACCTTGCGACATGGTGGATCTTGCAGATATTGACCTCAAGTACAGTGGAGAAGGTCCTGGCACAAGCACTTGTTCCAATGTTAAGCCTACTTTCAACGGCATAATGAATCCTTCCGCGTGCCCTGAGCTTGTTCTGCAACCTGCCTAA

Network for GWHGAAZE002441

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	8	335	1.40E-100

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01213	E3.2.1.67	Metabolic pathways	map01100
K01213	E3.2.1.67	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.386
	SRR3591710	White floral bud	42.372
	SRR3591711	White flower	1.375
	SRR3591712	Green floral bud	57.917
	SRR3591713	Yellow flower	0.415
SRP173429	SRR8316895	Juvenile bud stage	0.053
	SRR8316896	Juvenile bud stage	0.542
	SRR8316897	Juvenile bud stage	0.503
	SRR8316894	Third green stage	0.566
	SRR8316900	Third green stage	19.728
	SRR8316901	Third green stage	16.037
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.105
	SRR8316903	Complete white stage	0.090
	SRR8316902	Silver flowering stage	0.130
	SRR8316904	Silver flowering stage	0.483
	SRR8316905	Silver flowering stage	0.255
	SRR8316906	Gold flowering stage	0.217
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	12.757
	SRR6706287	Light intensity 50%	13.008
	SRR6706288	Light intensity 20%	12.410
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.891
	CNS0095593	Slightly white alabastrum(diploid) 2	8.212
	CNS0095594	Slightly white alabastrum(diploid) 3	6.464
	CNS0095595	Whole white alabastrum(diploid) 2	44.642
	CNS0095596	Whole white alabastrum(diploid) 3	48.204
	CNS0095597	Whole white alabastrum(diploid) 4	54.942
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	2.510
	CNS0095600	Silvery flower (diploied) 3	0.475
	CNS0095601	Golden flower (diploid) 1	0.288
	CNS0095602	Golden flower (diploid) 2	0.417
	CNS0095603	Golden flower (diploid) 3	0.515
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.455
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.427
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.944
	CNS0095608	Whole white alabastrum(tetraploid) 2	78.596
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.106
	CNS0095610	Silvery flower (tetraploid) 1	0.274
	CNS0095611	Silvery flower (tetraploid) 2	1.364
	CNS0095612	Silvery flower (tetraploid) 3	3.039
	CNS0095613	Golden flower (tetraploid) 1	0.584
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	2.308
CRA001975	CRR073297	Stem 1	0.687
	CRR073298	Stem 2	1.452
	CRR073299	Stem 3	0.106
	CRR073300	Leaf 1	17.000
	CRR073301	Leaf 2	11.158
	CRR073302	Leaf 3	8.964
	CRR073303	Juvenile bud 1	35.131
	CRR073304	Juvenile bud 2	42.123
	CRR073305	Juvenile bud 3	1.531
	CRR073306	Third green 1	6.356
	CRR073307	Third green 2	9.921
	CRR073308	Third green 3	5.555
	CRR073309	Second white 1	0.499
	CRR073310	Second white 2	1.169
	CRR073311	Second white 3	1.227
	CRR073312	Silver flowering 1	6.941
	CRR073313	Silver flowering 2	5.279
	CRR073314	Silver flowering 3	2.513
	CRR073315	Gold flowering 1	7.808
	CRR073316	Gold flowering 2	0.867
	CRR073317	Gold flowering 3	5.956
	CRR073318	Tawny withering 1	7.362
	CRR073319	Tawny withering 2	7.108
	CRR073320	Tawny withering 3	5.029