Detail information of GWHGAAZE002446


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009612480.13.8568E-111PREDICTED: polygalacturonase-like [Nicotiana tomentosiformis]
COGYP_001820212.12E-10galacturan 1,4-alpha-galacturonidase
Swissprottr|Q05967|PGLR_TOBAC4E-110Polygalacturonase (Precursor)
trEMBLtr|A0A058ZZK4|A0A058ZZK4_EUCGR4E-111Uncharacterized protein {ECO:0000313|EMBL:KCW46861.1}
TAIR10AT3G07820.11E-66Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7892336778925316-
GWHAAZE00000001mRNA7892336778925316-
GWHAAZE00000001exon7892336778923612-
GWHAAZE00000001exon7892375078923988-
GWHAAZE00000001exon7892406878924125-
GWHAAZE00000001exon7892425478924565-
GWHAAZE00000001exon7892530878925316-
GWHAAZE00000001CDS7892530878925316-
GWHAAZE00000001CDS7892425478924565-
GWHAAZE00000001CDS7892406878924125-
GWHAAZE00000001CDS7892375078923988-
GWHAAZE00000001CDS7892336778923612-
Transcript Sequence

Network for GWHGAAZE002446

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00295.18Glyco_hydro_28131272.40E-20
PF00295.18Glyco_hydro_281352075.00E-22
PF00295.18Glyco_hydro_282092683.80E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01213E3.2.1.67 Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0004650molecular_functionpolygalacturonase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.619
SRR3591706second leaf0.098
SRR3591707mature leaf0.372
SRR3591708Shoot apex0.901
SRR3591709Stem3.719
SRR3591710White floral bud383.973
SRR3591711White flower14.443
SRR3591712Green floral bud687.031
SRR3591713Yellow flower8.364
SRP173429 SRR8316895Juvenile bud stage 17.565
SRR8316896Juvenile bud stage 151.443
SRR8316897Juvenile bud stage 100.047
SRR8316894Third green stage 82.123
SRR8316900Third green stage 394.174
SRR8316901Third green stage 420.510
SRR8316898Complete white stage 0.233
SRR8316899Complete white stage 3.071
SRR8316903Complete white stage 0.593
SRR8316902Silver flowering stage5.113
SRR8316904Silver flowering stage12.375
SRR8316905Silver flowering stage3.550
SRR8316906Gold flowering stage 1.885
SRR8316907Gold flowering stage 0.425
SRR8316908Gold flowering stage 0.737
SRP132670SRR6706286Control264.550
SRR6706287Light intensity 50%269.880
SRR6706288Light intensity 20%234.870
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1316.980
CNS0095593Slightly white alabastrum(diploid) 2240.803
CNS0095594Slightly white alabastrum(diploid) 3356.468
CNS0095595Whole white alabastrum(diploid) 2621.782
CNS0095596Whole white alabastrum(diploid) 3860.295
CNS0095597Whole white alabastrum(diploid) 4606.999
CNS0095598Silvery flower (diploied) 124.976
CNS0095599Silvery flower (diploied) 299.243
CNS0095600Silvery flower (diploied) 323.188
CNS0095601Golden flower (diploid) 127.303
CNS0095602Golden flower (diploid) 220.352
CNS0095603Golden flower (diploid) 319.877
CNS0095604Slightly white alabastrum(tetraploid) 1734.552
CNS0095605Slightly white alabastrum(tetraploid) 2750.051
CNS0095606Slightly white alabastrum(tetraploid) 30.980
CNS0095607Whole white alabastrum(tetraploid) 11268.680
CNS0095608Whole white alabastrum(tetraploid) 21402.786
CNS0095609Whole white alabastrum(tetraploid) 3780.096
CNS0095610Silvery flower (tetraploid) 114.270
CNS0095611Silvery flower (tetraploid) 259.577
CNS0095612Silvery flower (tetraploid) 3135.897
CNS0095613Golden flower (tetraploid) 130.715
CNS0095614Golden flower (tetraploid) 25.248
CNS0095615Golden flower (tetraploid) 381.729
CRA001975CRR073297Stem 157.650
CRR073298Stem 295.597
CRR073299Stem 356.679
CRR073300Leaf 1294.333
CRR073301Leaf 2263.025
CRR073302Leaf 3174.147
CRR073303Juvenile bud 1268.439
CRR073304Juvenile bud 2315.277
CRR073305Juvenile bud 327.906
CRR073306Third green 1200.696
CRR073307Third green 2276.348
CRR073308Third green 3183.192
CRR073309Second white 117.316
CRR073310Second white 228.967
CRR073311Second white 342.512
CRR073312Silver flowering 1212.434
CRR073313Silver flowering 2158.170
CRR073314Silver flowering 399.009
CRR073315Gold flowering 1178.611
CRR073316Gold flowering 236.525
CRR073317Gold flowering 3113.267
CRR073318Tawny withering 1155.886
CRR073319Tawny withering 2166.229
CRR073320Tawny withering 3124.585