Gene detail

Detail information of GWHGAAZE002447

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009804151.1	3.5297E-176	PREDICTED: polygalacturonase-like [Nicotiana sylvestris]
COG	YP_001820212.1	2E-25	galacturan 1,4-alpha-galacturonidase
Swissprot	tr\|Q05967\|PGLR_TOBAC	3E-170	Polygalacturonase (Precursor)
trEMBL	tr\|A0A058ZUL9\|A0A058ZUL9_EUCGR	1E-173	Uncharacterized protein {ECO:0000313\|EMBL:KCW45154.1}
TAIR10	AT3G14040.1	6E-114	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	78940971	78942171	-
GWHAAZE00000001	mRNA	78940971	78942171	-
GWHAAZE00000001	exon	78941860	78942171	-
GWHAAZE00000001	exon	78940971	78941732	-
GWHAAZE00000001	CDS	78941860	78942171	-
GWHAAZE00000001	CDS	78940971	78941732	-

Transcript Sequence
>GWHTAAZE002451 GCTCTTCTGACTGCTTGGAAAGAGGCATGTGCATCACCAACTCCAAGTACAATAGTGATCCCAAAAGGCACATTTTTGTTGAATCAAGTGTCAATTGAAGGTCCTTGCAAGGCTCCAATAACCCTTAGATTAGAGGCAATATTAAAGGCGCCCGCTGACCCAGCCCAATTAAAGCCGGATCTAGAATGGGTCTGCTTTAGAAACATTGACCAATTCACAATGATTGGTGGTGGCACCTTTGATGGACAAGGAAAAATTGCTTGGGCCAACAATGATTGCAAGGCAACCGGAAAATGCAATAAACTTCCTAATAATCTCAGCTTGAACTTCCTCACCAATACGGTGATCCAAGAGATAACTTCTCTTGATAGTAAGTTGTTTCATGTCAATGTGCTCGGATGCAAGAACATAAGTTTTGTACGCTTTACCATCACCGCCCCCGAGGATAGCCTTAACACGGATGGAATCCACATCGGACGCTCAACCGGTGTCAAGATCATGGAATCTGATATAAAGACGGGTGATGATTGTGTGTCTATTGGTGATGGCAGCCAACAGGTTACTATCGAGAAAGTAACTTGTGGACCTGGTCATGGGATTGCCGTGGGAAGCCTTGGCAAGTACCCTAAGGAGGAACCCGTGGTTGGAATCTTTGTTAGGAACTGCACCATCACTGGAACAGATAATGGTGTAAGAGTTAAGACGTGGCCGGCTTCTGAACCTGGGGAGGCTTCTGATATTCACTTTGAGGATATTATCATGAATAATGTGAGCAATCCTGTCCTTATTGATCAAGAGTATTGTCCTAGTGGTCAATGCACAAAACAGATACCTTCAAAAGTGAAGATTAGCAAAGTTAGCTTTAAGAACATAAGGGGGACATCAGGGACGCAACTTGCTGTGAAAATTGTTTGCAGTCAGGGCATACCATGTGACGGTGTGGAAGTTGCAGATATTGACCTCACATACAGTGGAAAGGAAGGCCCAGCCACAAGCTTATGTGCCAACGTTAAGCCAACTTTCATTGGTAAAATAAATCCTCCCGCGTGTGCCGCGCCTGCTCAACCTGCATAA

Network for GWHGAAZE002447

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	10	338	2.80E-101

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01213	E3.2.1.67	Metabolic pathways	map01100
K01213	E3.2.1.67	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.879
	SRR3591706	second leaf	0.099
	SRR3591707	mature leaf	0.369
	SRR3591708	Shoot apex	1.563
	SRR3591709	Stem	5.271
	SRR3591710	White floral bud	573.621
	SRR3591711	White flower	23.808
	SRR3591712	Green floral bud	1016.688
	SRR3591713	Yellow flower	13.691
SRP173429	SRR8316895	Juvenile bud stage	30.782
	SRR8316896	Juvenile bud stage	252.374
	SRR8316897	Juvenile bud stage	186.749
	SRR8316894	Third green stage	135.630
	SRR8316900	Third green stage	683.649
	SRR8316901	Third green stage	694.769
	SRR8316898	Complete white stage	0.446
	SRR8316899	Complete white stage	6.350
	SRR8316903	Complete white stage	1.507
	SRR8316902	Silver flowering stage	10.641
	SRR8316904	Silver flowering stage	19.758
	SRR8316905	Silver flowering stage	6.077
	SRR8316906	Gold flowering stage	3.837
	SRR8316907	Gold flowering stage	0.942
	SRR8316908	Gold flowering stage	1.036
SRP132670	SRR6706286	Control	356.221
	SRR6706287	Light intensity 50%	344.735
	SRR6706288	Light intensity 20%	311.527
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	497.198
	CNS0095593	Slightly white alabastrum(diploid) 2	374.453
	CNS0095594	Slightly white alabastrum(diploid) 3	549.720
	CNS0095595	Whole white alabastrum(diploid) 2	924.839
	CNS0095596	Whole white alabastrum(diploid) 3	1260.890
	CNS0095597	Whole white alabastrum(diploid) 4	922.993
	CNS0095598	Silvery flower (diploied) 1	48.504
	CNS0095599	Silvery flower (diploied) 2	157.650
	CNS0095600	Silvery flower (diploied) 3	40.443
	CNS0095601	Golden flower (diploid) 1	52.338
	CNS0095602	Golden flower (diploid) 2	32.265
	CNS0095603	Golden flower (diploid) 3	31.222
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1203.503
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1263.779
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.405
	CNS0095607	Whole white alabastrum(tetraploid) 1	2046.871
	CNS0095608	Whole white alabastrum(tetraploid) 2	2247.041
	CNS0095609	Whole white alabastrum(tetraploid) 3	1167.322
	CNS0095610	Silvery flower (tetraploid) 1	24.964
	CNS0095611	Silvery flower (tetraploid) 2	106.901
	CNS0095612	Silvery flower (tetraploid) 3	237.500
	CNS0095613	Golden flower (tetraploid) 1	44.464
	CNS0095614	Golden flower (tetraploid) 2	8.800
	CNS0095615	Golden flower (tetraploid) 3	139.343
CRA001975	CRR073297	Stem 1	137.889
	CRR073298	Stem 2	198.153
	CRR073299	Stem 3	111.472
	CRR073300	Leaf 1	573.229
	CRR073301	Leaf 2	481.869
	CRR073302	Leaf 3	386.182
	CRR073303	Juvenile bud 1	545.547
	CRR073304	Juvenile bud 2	567.920
	CRR073305	Juvenile bud 3	55.113
	CRR073306	Third green 1	346.420
	CRR073307	Third green 2	506.195
	CRR073308	Third green 3	364.498
	CRR073309	Second white 1	34.191
	CRR073310	Second white 2	74.626
	CRR073311	Second white 3	84.283
	CRR073312	Silver flowering 1	401.348
	CRR073313	Silver flowering 2	435.259
	CRR073314	Silver flowering 3	229.341
	CRR073315	Gold flowering 1	371.324
	CRR073316	Gold flowering 2	80.607
	CRR073317	Gold flowering 3	242.000
	CRR073318	Tawny withering 1	325.780
	CRR073319	Tawny withering 2	300.198
	CRR073320	Tawny withering 3	275.210