Detail information of GWHGAAZE002448


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009804151.14.0465E-176PREDICTED: polygalacturonase-like [Nicotiana sylvestris]
COGYP_001820212.13E-25galacturan 1,4-alpha-galacturonidase
Swissprottr|Q05967|PGLR_TOBAC2E-170Polygalacturonase (Precursor)
trEMBLtr|A0A058ZUL9|A0A058ZUL9_EUCGR7E-174Uncharacterized protein {ECO:0000313|EMBL:KCW45154.1}
TAIR10AT3G14040.14E-114Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7895833678960277-
GWHAAZE00000001mRNA7895833678960277-
GWHAAZE00000001exon7895833678959097-
GWHAAZE00000001exon7895922678959537-
GWHAAZE00000001exon7896026978960277-
GWHAAZE00000001CDS7896026978960277-
GWHAAZE00000001CDS7895922678959537-
GWHAAZE00000001CDS7895833678959097-
Transcript Sequence

Network for GWHGAAZE002448

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00295.18Glyco_hydro_28133412.90E-101
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01213E3.2.1.67 Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0004650molecular_functionpolygalacturonase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE002448.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 302004006008001000120014001600Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.660
SRR3591706second leaf0.100
SRR3591707mature leaf0.262
SRR3591708Shoot apex1.128
SRR3591709Stem4.309
SRR3591710White floral bud422.374
SRR3591711White flower18.854
SRR3591712Green floral bud750.472
SRR3591713Yellow flower10.289
SRP173429 SRR8316895Juvenile bud stage 29.413
SRR8316896Juvenile bud stage 223.297
SRR8316897Juvenile bud stage 139.104
SRR8316894Third green stage 113.185
SRR8316900Third green stage 564.809
SRR8316901Third green stage 587.379
SRR8316898Complete white stage 0.817
SRR8316899Complete white stage 5.467
SRR8316903Complete white stage 1.136
SRR8316902Silver flowering stage9.788
SRR8316904Silver flowering stage16.669
SRR8316905Silver flowering stage5.274
SRR8316906Gold flowering stage 3.219
SRR8316907Gold flowering stage 0.677
SRR8316908Gold flowering stage 0.885
SRP132670SRR6706286Control275.233
SRR6706287Light intensity 50%254.469
SRR6706288Light intensity 20%235.079
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1448.764
CNS0095593Slightly white alabastrum(diploid) 2331.147
CNS0095594Slightly white alabastrum(diploid) 3498.851
CNS0095595Whole white alabastrum(diploid) 2806.591
CNS0095596Whole white alabastrum(diploid) 31075.253
CNS0095597Whole white alabastrum(diploid) 4832.142
CNS0095598Silvery flower (diploied) 141.201
CNS0095599Silvery flower (diploied) 2126.112
CNS0095600Silvery flower (diploied) 332.285
CNS0095601Golden flower (diploid) 144.534
CNS0095602Golden flower (diploid) 226.513
CNS0095603Golden flower (diploid) 325.211
CNS0095604Slightly white alabastrum(tetraploid) 1801.436
CNS0095605Slightly white alabastrum(tetraploid) 2828.588
CNS0095606Slightly white alabastrum(tetraploid) 31.257
CNS0095607Whole white alabastrum(tetraploid) 11355.727
CNS0095608Whole white alabastrum(tetraploid) 21478.831
CNS0095609Whole white alabastrum(tetraploid) 3851.237
CNS0095610Silvery flower (tetraploid) 117.469
CNS0095611Silvery flower (tetraploid) 269.568
CNS0095612Silvery flower (tetraploid) 3137.188
CNS0095613Golden flower (tetraploid) 134.193
CNS0095614Golden flower (tetraploid) 25.877
CNS0095615Golden flower (tetraploid) 387.958
CRA001975CRR073297Stem 1119.031
CRR073298Stem 2168.034
CRR073299Stem 395.203
CRR073300Leaf 1464.884
CRR073301Leaf 2410.886
CRR073302Leaf 3312.212
CRR073303Juvenile bud 1425.307
CRR073304Juvenile bud 2466.456
CRR073305Juvenile bud 346.713
CRR073306Third green 1279.366
CRR073307Third green 2411.595
CRR073308Third green 3284.409
CRR073309Second white 127.695
CRR073310Second white 258.980
CRR073311Second white 367.366
CRR073312Silver flowering 1324.803
CRR073313Silver flowering 2359.339
CRR073314Silver flowering 3181.355
CRR073315Gold flowering 1296.623
CRR073316Gold flowering 264.824
CRR073317Gold flowering 3191.188
CRR073318Tawny withering 1255.456
CRR073319Tawny withering 2267.790
CRR073320Tawny withering 3220.459