Detail information of GWHGAAZE002457


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHN43959.10DAZ-associated protein 1 [Glycine soja]
COGYP_003709088.14E-15RNA-binding protein
Swissprottr|Q8W034|RNP1_ARATH1E-73Heterogeneous nuclear ribonucleoprotein 1
trEMBLtr|V7BDF1|V7BDF1_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW14501.1}
TAIR10AT3G07810.13E-126RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7911592579120144-
GWHAAZE00000001mRNA7911592579120144-
GWHAAZE00000001exon7911992379120144-
GWHAAZE00000001exon7911852379119714-
GWHAAZE00000001exon7911592579115938-
GWHAAZE00000001CDS7911992379120144-
GWHAAZE00000001CDS7911852379119714-
GWHAAZE00000001CDS7911592579115938-
Transcript Sequence

Network for GWHGAAZE002457

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_18694.50E-16
PF00076.23RRM_11081651.40E-15
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14411MSI mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE002457.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf52.642
SRR3591706second leaf16.341
SRR3591707mature leaf16.359
SRR3591708Shoot apex17.360
SRR3591709Stem49.025
SRR3591710White floral bud38.189
SRR3591711White flower30.901
SRR3591712Green floral bud46.090
SRR3591713Yellow flower18.320
SRP173429 SRR8316895Juvenile bud stage 49.880
SRR8316896Juvenile bud stage 78.216
SRR8316897Juvenile bud stage 50.732
SRR8316894Third green stage 15.044
SRR8316900Third green stage 48.318
SRR8316901Third green stage 59.228
SRR8316898Complete white stage 15.863
SRR8316899Complete white stage 43.875
SRR8316903Complete white stage 29.171
SRR8316902Silver flowering stage15.414
SRR8316904Silver flowering stage23.899
SRR8316905Silver flowering stage10.259
SRR8316906Gold flowering stage 30.148
SRR8316907Gold flowering stage 32.311
SRR8316908Gold flowering stage 33.107
SRP132670SRR6706286Control49.332
SRR6706287Light intensity 50%52.503
SRR6706288Light intensity 20%54.196
CNP0000432CNS0095592Slightly white alabastrum(diploid) 134.302
CNS0095593Slightly white alabastrum(diploid) 235.293
CNS0095594Slightly white alabastrum(diploid) 336.246
CNS0095595Whole white alabastrum(diploid) 242.026
CNS0095596Whole white alabastrum(diploid) 338.378
CNS0095597Whole white alabastrum(diploid) 432.724
CNS0095598Silvery flower (diploied) 132.678
CNS0095599Silvery flower (diploied) 237.475
CNS0095600Silvery flower (diploied) 340.284
CNS0095601Golden flower (diploid) 131.944
CNS0095602Golden flower (diploid) 235.180
CNS0095603Golden flower (diploid) 336.057
CNS0095604Slightly white alabastrum(tetraploid) 136.270
CNS0095605Slightly white alabastrum(tetraploid) 235.526
CNS0095606Slightly white alabastrum(tetraploid) 334.024
CNS0095607Whole white alabastrum(tetraploid) 141.620
CNS0095608Whole white alabastrum(tetraploid) 233.946
CNS0095609Whole white alabastrum(tetraploid) 343.815
CNS0095610Silvery flower (tetraploid) 137.881
CNS0095611Silvery flower (tetraploid) 231.390
CNS0095612Silvery flower (tetraploid) 334.757
CNS0095613Golden flower (tetraploid) 123.485
CNS0095614Golden flower (tetraploid) 231.777
CNS0095615Golden flower (tetraploid) 325.515
CRA001975CRR073297Stem 128.880
CRR073298Stem 225.355
CRR073299Stem 316.747
CRR073300Leaf 135.744
CRR073301Leaf 239.869
CRR073302Leaf 317.470
CRR073303Juvenile bud 125.031
CRR073304Juvenile bud 220.274
CRR073305Juvenile bud 324.850
CRR073306Third green 125.736
CRR073307Third green 221.526
CRR073308Third green 324.125
CRR073309Second white 114.636
CRR073310Second white 216.182
CRR073311Second white 310.850
CRR073312Silver flowering 111.991
CRR073313Silver flowering 29.410
CRR073314Silver flowering 313.269
CRR073315Gold flowering 14.018
CRR073316Gold flowering 26.477
CRR073317Gold flowering 33.624
CRR073318Tawny withering 125.256
CRR073319Tawny withering 222.549
CRR073320Tawny withering 329.816