Gene detail

Detail information of GWHGAAZE002463

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002272218.1	PREDICTED: vacuolar protein-sorting-associated protein 11 homolog isoform X3 [Vitis vinifera]
Swissprot	tr\|Q9SJ40\|VPS11_ARATH	Vacuolar protein-sorting-associated protein 11 homolog
trEMBL	tr\|F6HHM1\|F6HHM1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51717.1}
TAIR10	AT2G05170.1	vacuolar protein sorting 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	79238509	79242705	+
GWHAAZE00000001	mRNA	79238509	79242705	+
GWHAAZE00000001	exon	79238509	79238730	+
GWHAAZE00000001	exon	79239454	79239627	+
GWHAAZE00000001	exon	79239740	79240063	+
GWHAAZE00000001	exon	79240156	79241880	+
GWHAAZE00000001	exon	79242316	79242705	+
GWHAAZE00000001	CDS	79238509	79238730	+
GWHAAZE00000001	CDS	79239454	79239627	+
GWHAAZE00000001	CDS	79239740	79240063	+
GWHAAZE00000001	CDS	79240156	79241880	+
GWHAAZE00000001	CDS	79242316	79242705	+

Transcript Sequence
>GWHTAAZE002467 ATGTATCAGTGGAGGAAATTCGAGTTCTTCGAGGAGAAATATGCCGGGAAATGCTCGATTCCCGAGGAAGTCACCGGAAAAATCGAGTGCTGTTCCAGTGGAAGGGGGAAGATCGGGGTTGGATGTGATGACGGCACCGTCAATTTGCTGGATCGTGGATTGAAGTTCAATTATGGATTCCAAGCTCACTCTTCCTCTCTTCTCTTCCTTCACCTCCTCAAGCAACGTAACTTTGTAGTTACTGTTGGAGAAGATGAACAAGTATCTCCTCAGCTATCAGCTGTGTGCCTTAAGGTTTTTGACCTTGACAAGATGCAGCCCGAGGGGCCAAGCACATCAGGTCCCGAATGTATTCAAATATTGCGGATATTCACTAATCAGTTTCCTGAAGCTAAGATAACATCATTTTTAGTTCTAGAGGAAGCTCCACCAATATTGCTGATAGCTATTGGATTAGACAATGGTTGCATTTATTGCATTCAAGGGGATATTGCACGTGAGCGTATCAAGCGGTTTAGGCTTCAGGTGGATAATCATTCAGACAGAAGCCAATCTTCTATAAGAGGCCTAGCATTTCGAGTCGATGGTCAAGCCCTTCAATTATTTGCAGTTACTCCTACTTCAGTGAGCTTGTTTAGCTTACGGACTCAACCAGCCAGTCGCCAAACCCTGGATCAGATTGGATGTAATGTTTGTAGTGTTGCGATGAGTGATCGCTTGGAGTTTATCATTGGTCGACCCGAGGCTATTTATTTCTATGAAGTTGATGGTCGGGGCCCTTGTTGGGCCTTTGAGGGAGAGAAGAAATTCCTTGGATGGTTTCGTGGATACCTTGTATGTGTTGTTGCAGATCAAAGAAATGACACTAACACTTTCAACGTGTATGACCTGAAGAACCGTTTAATTGCCCACAGTATCGTGGTTAAAGAAGTTTCTCACATGCTTTGTGAATGGGGTAATATAATACTTATAATGACCAACAAATCAGCTCTGTGTATTGGAGAGAAGGATATGCAAAGCAAGTTAGACATGCTTTTTAAAAAGAATCTTTATACTGTAGCTATCAATATTGTTCATAGTCAACACGCTGATGCTGCCGCAACCGCTGAAGTGCTAAGGAAGTATGGGGATCACCTATACACCAAACAAGACTATGATGAGGCTATGGCTCAGTACATCCACACCATTGGTCACCTTGAACCTTCATATGTGATACAGAAGTTTTTAGATGCACAAAGAATCTACAACCTTACCAATTACTTGGAAAAGTTACACGAGAAGGGTCTTGGATCCAAAGATCACACCACTCTTCTGTTAAACTGTTATACCAAATCAAAAGAAGTTGAAAAACTGAATGTGTTCATCAAACAGGAGGAAGGTGTTACGGAGCATAAATTCGATGTGGAAACTGTAATTAGGGTTTGCCGGGCTGCCAATTATCACGAGCATGCGATGTACGTTGCTAAGAAGGCTGGTAGGCATGAATGGTACTTAAAGATCTTACTTGAAGATCTGGGTCGATATGATGAAGCATTGCAATATATTTCTAGCCTTGAACCAAGTCAAGCTGGGGTAACGGTAAAAGAATATGGCAAAATTCTCATAGAGCACAAACCAGTGGAAACAATTGAGATACTCATAAGGCTTTGCACCGAGGAAGGGGAACCAGCCAAAAGAGGGACTTCCACTAGTACATATGTGTCCATGTTGCCATCTCCTGTTGATTTCCTCAACATTTTCATTCATCACCCGCATTCACTTATGGATTTTCTTGAAAAATACATCGATGTAGTGAAGGATTCACCCGCTCAAGTAGAGATTCACAACACACTTTTGGAGCTATACTTGTCTAATGATTTGAACTTGCCATCAGTCTCACTTGTTAACACGGACAGTAATGATAATGTGAATTTAACTGCAGAACACAAGGATTTGACCAAGGAAAAGGATAGTCAAGACAGACTAAAGAAGGGGCTCAACTTGCTCAAGAATGCATGGCCATCTGACCAGGAACATCCACTGTATGACGTTGATCTTACTATAATTCTCTGTGAAATGAATGGTTTTAAAGAAGGTTTATTGCATCTTTATGAGAAGATGAAACTTTATAAGGAAGTGATTGCTTGCTACATGCAGGCACAAGACCATAAGGGTTTAATTGCATGCTGCAAGAAACTGGGGGATTCGGATAAGGGAGGTGACCCTTCGCTTTGGGTGGATCTATTGAAGTACTTTGGTGAACTCGGAGAAGACTGCTCTGCAGAAGTTAAGGAAGTTTTGGCCTATATTGAAAGGGATGACATTTTGCCTCCTATTATTGTTCTTCAAACCTTGTCCCAAAATCCATGCCTCGCCCTCTCTGTCATCAAAGATTACATAGCTCGAAAGCTGGAACAGGAATCTAAGCTAATTGAAGAGGATCGACGAGCTATTGACCAGTATCAGGAAGAAACATCGGCAATGAGGAAAGAAATCCAGGATCTGAGGACTAATGCTAGAATCTTTCAGCTTAGCAAGTGCACTGCTTGCACTTTCACTCTCGATCTCCCTGCTGTTCACTTTCTGTGTATGCACTCTTTTCATCAGCGATGCCTTGGTGACAATGAAAAGGAATGTCCCGAGTGCGCTCCTGAGTACAGGTCTGTTCTGGAAATGAAGAGAAGCTTAGAGTTGAATTCCGAAGACCATGATCTGTTCTTCCAGCAAGTTAAGAGTTCAAATGATGGGTTTTCTGTAATTGCTAAGTATTTCGGAAAGGGGATAATTAGCAAAACTGCTGATGGACCTACTGGCACTCTTAGACCAAGCAGCACTTCTCCCAGCAGTGGCTTTTGA

Network for GWHGAAZE002463

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00637.21	Clathrin	400	522	3.80E-14
PF17122.6	zf-C3H2C3	840	875	3.30E-06
PF12451.9	VPS11_C	880	922	3.60E-14

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
K20179	VPS11, PEP5	Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.419
	SRR3591706	second leaf	5.719
	SRR3591707	mature leaf	6.127
	SRR3591708	Shoot apex	7.307
	SRR3591709	Stem	5.085
	SRR3591710	White floral bud	4.382
	SRR3591711	White flower	3.688
	SRR3591712	Green floral bud	7.328
	SRR3591713	Yellow flower	1.411
SRP173429	SRR8316895	Juvenile bud stage	7.068
	SRR8316896	Juvenile bud stage	8.590
	SRR8316897	Juvenile bud stage	5.056
	SRR8316894	Third green stage	4.148
	SRR8316900	Third green stage	7.874
	SRR8316901	Third green stage	7.317
	SRR8316898	Complete white stage	1.323
	SRR8316899	Complete white stage	11.546
	SRR8316903	Complete white stage	2.905
	SRR8316902	Silver flowering stage	1.349
	SRR8316904	Silver flowering stage	2.215
	SRR8316905	Silver flowering stage	1.451
	SRR8316906	Gold flowering stage	2.847
	SRR8316907	Gold flowering stage	2.579
	SRR8316908	Gold flowering stage	4.870
SRP132670	SRR6706286	Control	5.343
	SRR6706287	Light intensity 50%	6.045
	SRR6706288	Light intensity 20%	7.437
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.880
	CNS0095593	Slightly white alabastrum(diploid) 2	5.453
	CNS0095594	Slightly white alabastrum(diploid) 3	4.620
	CNS0095595	Whole white alabastrum(diploid) 2	5.536
	CNS0095596	Whole white alabastrum(diploid) 3	5.726
	CNS0095597	Whole white alabastrum(diploid) 4	6.681
	CNS0095598	Silvery flower (diploied) 1	9.150
	CNS0095599	Silvery flower (diploied) 2	5.480
	CNS0095600	Silvery flower (diploied) 3	6.064
	CNS0095601	Golden flower (diploid) 1	4.785
	CNS0095602	Golden flower (diploid) 2	6.529
	CNS0095603	Golden flower (diploid) 3	6.319
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.124
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.108
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.445
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.557
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.190
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.135
	CNS0095610	Silvery flower (tetraploid) 1	7.748
	CNS0095611	Silvery flower (tetraploid) 2	10.894
	CNS0095612	Silvery flower (tetraploid) 3	8.545
	CNS0095613	Golden flower (tetraploid) 1	2.691
	CNS0095614	Golden flower (tetraploid) 2	6.984
	CNS0095615	Golden flower (tetraploid) 3	1.352
CRA001975	CRR073297	Stem 1	14.301
	CRR073298	Stem 2	11.158
	CRR073299	Stem 3	11.273
	CRR073300	Leaf 1	6.790
	CRR073301	Leaf 2	5.713
	CRR073302	Leaf 3	5.130
	CRR073303	Juvenile bud 1	6.466
	CRR073304	Juvenile bud 2	4.080
	CRR073305	Juvenile bud 3	6.428
	CRR073306	Third green 1	0.858
	CRR073307	Third green 2	1.742
	CRR073308	Third green 3	1.214
	CRR073309	Second white 1	0.703
	CRR073310	Second white 2	1.231
	CRR073311	Second white 3	0.564
	CRR073312	Silver flowering 1	0.260
	CRR073313	Silver flowering 2	0.466
	CRR073314	Silver flowering 3	0.303
	CRR073315	Gold flowering 1	11.932
	CRR073316	Gold flowering 2	18.058
	CRR073317	Gold flowering 3	11.845
	CRR073318	Tawny withering 1	12.406
	CRR073319	Tawny withering 2	11.392
	CRR073320	Tawny withering 3	13.340