Detail information of GWHGAAZE002464


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP19007.18.8463E-30unnamed protein product [Coffea canephora]
Swissprottr|P12062|CB26_PETSP8E-29Chlorophyll a-b binding protein 37, chloroplastic (Precursor)
trEMBLtr|A0A068VEI6|A0A068VEI6_COFCA3E-30Coffea canephora DH200=94 genomic scaffold, scaffold_324 {ECO:0000313|EMBL:CDP19007.1}
TAIR10AT2G05100.13E-22photosystem II light harvesting complex gene 2.1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7926972679270391+
GWHAAZE00000001mRNA7926972679270391+
GWHAAZE00000001exon7926972679269871+
GWHAAZE00000001exon7927033179270391+
GWHAAZE00000001CDS7926972679269871+
GWHAAZE00000001CDS7927033179270391+
Transcript Sequence

Network for GWHGAAZE002464

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08913LHCB2 Metabolic pathways map01100
Photosynthesis - antenna proteinsmap00196

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf73.654
SRR3591706second leaf332.534
SRR3591707mature leaf68.450
SRR3591708Shoot apex106.722
SRR3591709Stem22.471
SRR3591710White floral bud0.000
SRR3591711White flower1.693
SRR3591712Green floral bud0.613
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 17.313
SRR8316896Juvenile bud stage 13.135
SRR8316897Juvenile bud stage 10.046
SRR8316894Third green stage 7.070
SRR8316900Third green stage 14.012
SRR8316901Third green stage 15.592
SRR8316898Complete white stage 6.550
SRR8316899Complete white stage 6.715
SRR8316903Complete white stage 7.668
SRR8316902Silver flowering stage6.874
SRR8316904Silver flowering stage10.810
SRR8316905Silver flowering stage5.689
SRR8316906Gold flowering stage 5.134
SRR8316907Gold flowering stage 5.904
SRR8316908Gold flowering stage 10.708
SRP132670SRR6706286Control38.089
SRR6706287Light intensity 50%53.094
SRR6706288Light intensity 20%53.782
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.952
CNS0095593Slightly white alabastrum(diploid) 29.560
CNS0095594Slightly white alabastrum(diploid) 37.140
CNS0095595Whole white alabastrum(diploid) 29.691
CNS0095596Whole white alabastrum(diploid) 312.722
CNS0095597Whole white alabastrum(diploid) 47.249
CNS0095598Silvery flower (diploied) 131.206
CNS0095599Silvery flower (diploied) 227.352
CNS0095600Silvery flower (diploied) 38.810
CNS0095601Golden flower (diploid) 123.672
CNS0095602Golden flower (diploid) 210.788
CNS0095603Golden flower (diploid) 310.674
CNS0095604Slightly white alabastrum(tetraploid) 122.508
CNS0095605Slightly white alabastrum(tetraploid) 218.335
CNS0095606Slightly white alabastrum(tetraploid) 343.053
CNS0095607Whole white alabastrum(tetraploid) 111.425
CNS0095608Whole white alabastrum(tetraploid) 26.980
CNS0095609Whole white alabastrum(tetraploid) 320.370
CNS0095610Silvery flower (tetraploid) 17.369
CNS0095611Silvery flower (tetraploid) 25.827
CNS0095612Silvery flower (tetraploid) 31.100
CNS0095613Golden flower (tetraploid) 11.743
CNS0095614Golden flower (tetraploid) 25.972
CNS0095615Golden flower (tetraploid) 33.874
CRA001975CRR073297Stem 13.791
CRR073298Stem 23.101
CRR073299Stem 34.059
CRR073300Leaf 10.815
CRR073301Leaf 22.268
CRR073302Leaf 32.173
CRR073303Juvenile bud 12.739
CRR073304Juvenile bud 21.162
CRR073305Juvenile bud 30.542
CRR073306Third green 117.195
CRR073307Third green 29.011
CRR073308Third green 312.668
CRR073309Second white 10.584
CRR073310Second white 20.885
CRR073311Second white 30.107
CRR073312Silver flowering 10.506
CRR073313Silver flowering 20.034
CRR073314Silver flowering 30.000
CRR073315Gold flowering 119.663
CRR073316Gold flowering 215.470
CRR073317Gold flowering 314.445
CRR073318Tawny withering 12.394
CRR073319Tawny withering 20.115
CRR073320Tawny withering 30.125