Gene detail

Detail information of GWHGAAZE002470

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009760175.1	0	PREDICTED: histidine kinase 2 isoform X1 [Nicotiana sylvestris]
COG	YP_644044.1	1E-91	multi-sensor hybrid histidine kinase
Swissprot	tr\|Q9C5U2\|AHK2_ARATH	0	Histidine kinase 2
trEMBL	tr\|F6HHM7\|F6HHM7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51723.1}
TAIR10	AT5G35750.1	0	histidine kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	79334063	79343565	+
GWHAAZE00000001	mRNA	79334063	79343565	+
GWHAAZE00000001	exon	79334063	79334377	+
GWHAAZE00000001	exon	79335161	79335421	+
GWHAAZE00000001	exon	79336457	79336741	+
GWHAAZE00000001	exon	79337824	79338099	+
GWHAAZE00000001	exon	79338268	79338437	+
GWHAAZE00000001	exon	79338539	79338751	+
GWHAAZE00000001	exon	79338870	79339056	+
GWHAAZE00000001	exon	79339255	79339306	+
GWHAAZE00000001	exon	79339391	79339620	+
GWHAAZE00000001	exon	79339728	79339826	+
GWHAAZE00000001	exon	79340094	79340758	+
GWHAAZE00000001	exon	79341411	79341920	+
GWHAAZE00000001	exon	79342385	79342842	+
GWHAAZE00000001	exon	79343498	79343565	+
GWHAAZE00000001	CDS	79334063	79334377	+
GWHAAZE00000001	CDS	79335161	79335421	+
GWHAAZE00000001	CDS	79336457	79336741	+
GWHAAZE00000001	CDS	79337824	79338099	+
GWHAAZE00000001	CDS	79338268	79338437	+
GWHAAZE00000001	CDS	79338539	79338751	+
GWHAAZE00000001	CDS	79338870	79339056	+
GWHAAZE00000001	CDS	79339255	79339306	+
GWHAAZE00000001	CDS	79339391	79339620	+
GWHAAZE00000001	CDS	79339728	79339826	+
GWHAAZE00000001	CDS	79340094	79340758	+
GWHAAZE00000001	CDS	79341411	79341920	+
GWHAAZE00000001	CDS	79342385	79342598	+
GWHAAZE00000001	three_prime_UTR	79342599	79342842	+
GWHAAZE00000001	three_prime_UTR	79343498	79343565	+

Transcript Sequence
>GWHTAAZE002474 ATGTCTTTGAATTGCAAGTTCTCTGGGTTAAATAGCAAATCTTCAGCCAATTTCAAGGTTAAGAAAGCTCAAGAACCTTTGGGTGGATCTAACTACTTTGGGTGGTTTGGGTGGAAATGGACAGTGCTTTTCTTTATGTGGATTTTGGTTGTTGTCATTGGTTTGTTTTGGGTCTCGTATGGTTCTAAATATGGGGCTTTGAGAGGAGAAGTGGATATTGAGTTAAGTTTGGGCGAAGCTCCAATTTTGCAGCATTTCAATGTCAGCAGGGAACAACTTCATGCGTTGGTTTCTTCATTCTTTGAATCAGATCAGATAACATCCTTCAAATGTACCAAATTGTCAAGATATGAAAAGCCCATCTGTGCCCTCAAGTTGCCCGGTCCACAAAACAAGGGTCTTGACAAGGAAAATGGATGGGTTGCAGACAATATTGAACCCAAGGACCAATGCTTTGTTCAAGACGAGAATATTCGCATGAAGTTTGACCTATCACTGCCAAAGGATAATGCTCTTTCATTAGTTTTGCAACCCACTTCTTCCTCAATTTTGTCGAATTGCCATAGTTGTGAAGAGGTTAAGCTGCAACAGCAAGCTCAAAGTTCCTTGAGAAGTGCCGGCAAGTGGAGGAAGAAGCTCCTAATTATGTTTGTCTTGGCTGGAGTGACCGGATCTGTTTGGTTATTTTGGCACCTGAATACTGATATTAGTTTCAGGAGGAAAGAAACGCTTGCAAACATGTGTGATGAACGAGCCCGAATGCTTCAAGACCAATTCAATGTGAGCATGAACCATGTTCATGCCTTGGCTATTCTTGTCTCCACTTTTCACCATGGAAAACACCCTTCCGCAATAGATCAGAAAACATTTGGAGCATATACTGAGAGAACGGCTTTTGAGAGACCACTTACTAGTGGCGTTGCCTATGCTTTGAGGGTTCCTCACTCCGAGAGGGAGCGATTCGAGAAGCAGCAGGGGTGGACAATAAAGAAAATGGAAACTGAGGATCAAACTTTAGTCCAAGACTGTACCCCAGAGAATTTGGATCCTTCACCTGTTCAAGATGAATATGCACCCGTTATATTTTCTCAAGAAACTGTCTCTCACATTGTCTCCATTGACATGATGTCTGGAAAGGAAGATCGTGAGAACATCTTGCGAGCGCGGGCATCTGGAAAGGCTGTCCTTACATCTCCTTTTAAGCTATTAAAATCCAATCACCTCGGTGTTGTTCTTACTTTTGCCGTCTATAACACTGACCTCCCTCCAGATGCTACAGCAGAGCAATGTATTAATGCCACTGTCGGGTATCTAGGTGCATCTTATGATGTCCCATCACTAGTGGAGAAGCTTCTACATCAACTTGCTAGCAAGCAAACCATAGTGGTGAATGTGTACGATACAACCAACAAATCTGCGCCGATTAATATGTATGGTTCTAATGTGACTGATACGGGACTACTACACAGTAGCAGCCTTGATTTTGGGGATCCCACTCGAAAGCATGAGATGCATTGCAGGTTCAAACAGGTCCCACCTCCACCTTGGACAGCCATAGCGGCATCGGTTGGAGTTCTTGTAATCACTTTGCTTCTTGGTCATATCTTTCATGCAGCCATAAACCAAATTGCAAAAGTTGAGCATGACTATCGGGAGATGATGGAGCTCAAACATCGCGCTGAAGCTGCAGATGTAGCAAAATCTCAGTTTCTTGCAACAGTTTCCCATGAAATCAGGACTCCAATGAACGGCGTTTTAGGCATGCTGCAGATGCTTATGGACACGAATCTCGATGCAAACCAACTGGATTATGCACAGACTGCTCATGCTAGTGGAAAAGATTTAATATCTTTGATTAATGAGGTTCTTGATCAGGCTAAGATTGAATCAGGCAGGCTTGAGCTCGAGGCTGTACCCTTTGATCTGCGTGCTGCTCTTGATAATGTTTTATCTCTTTTCTCGGGAAAATCTCATGAAAAAGGGATTGAGTTGGCCATATATGTCTCTGATCAAGTTCCTGAAGTTGTTGTTGGAGATCCAGGGCGGTTGCGGCAGATAATTGCAAATCTTGTTGGAAACTCAATTAAGTTCATACAAGACAAAGGACACATATTTGTCTCGGTGCATATAGCTGAAGAAGCTAGACCACTCAATGTGAAAGACGAAGTGCTTAGACAAAGCCTGACCTCCGTTCAAGACTGGTCAAATGACTCTTATAACACATTGAGCGGTTACCCAGTTGTTGACAGATGGAAAAGCTGGTCCCATTTCGAAAGCTTTAACAACACATCTTTGAATGAAGGGACTGAAGTGATCAAAATACTAGTAACTGTTGAAGACACAGGAGTGGGAATTCCACTCGAAGCCCAAGAACGCATTTTCATGCCATTTATGCAGGCTGACAGTTCCACGTCCCGAACCTACGGTGGGACCGGAATAGGGCTGAGCATTAGCAAGCGGTTGGTGGACCTTATGGGTGGTGAAATCGGGTTTGTAAGTGAACCGGGCACCGGTAGTACATTTTCGTTTACAGCAAATTTTGCAAAAGGGGATTTAAATTCTTTGGAAACAAAATCCCAACAGTACCATCCAGCTGTTTCGGAGTTTCGGGGGTTGAGGGCTTTGGTGGTCGATGGGAAAAGCATACGAGCCGAGGTCACAAGATATCATCTTCAAAGATTGGGGATATCGGTGGATATAACTTACAGTGTGGATTCTGCATGCTCTTATCTATCTAGTTACTCCAAGACAAGCAGTGCATCGGCTCATTTAGCCATGATTCTGGTTGATAAGGACACTTGGAACGAAAAGAAGGGTCTTTCATTCCATCATCTTCTCAAGGAATTCAAACCAAATGAGGGCAAAAACTTACCGGAGCTCACTCCGAAGACATTTCTATTGGCAACCTCTACATGCTCTACCATGTGTAATCATCTCAAATCAGCCGGTTTAGTGGATAATGTGCTTGGAAAGCCACTTCGTTTAAGCGCATTAATTTCTTGTTTCCAAGATACCCTTAGGATCGGAAAGAAGAGGCAAGTAAAGAGGGGAGAACCTTCTACACTCGGGATTCTATTAAGAGGGAAGCAGATTTTGGTGGTGGATGATAATATGGTTAATAGAAGAGTGGCTGAAGGCGCTCTTAAGAAGTATGGTGCAATTGTTACTTGTGTGGATAGCGGGAAGGCTGGTTTAAGGATGCTTAACCCTCCCCACGGCTTTGATGCTTGCTTCATGGATCTCCAAATGCCTGAAATGGACGGGTTTGAAGCTACTCGGCAAATCCGCAGTCTAGAGAGCAAGTTTAACCTTTCAAATGAGGCTCATTGGCATACACCAATATTGGCAATGACAGCTGATGTGATACAAGCGACAAACGAAGAGTGCTCAAAGTGCGGAATGGACGGTTATGTGGCGAAGCCATTTCAAGAAGAACAACTTTATTCTGCAGCCGCACCCTTCTTTGAGACTGGCTGATAGAGTGGGACCTACCCTGGGGGGGGGGGGCGTGCTAACTTCGCAACACTTTACTTGAGGCTGGCTAATAGAACAAGACTATGACTGACTTGGCAACAGTGTGTCTGTAACGGTCTGTACTGTTTACTTAATCAGAGCTGTTTTCAGATTAAAGCACAATGCTGTTTGGTTATCTGATTTCCGAGTCCCTTACTGCTACCAGATGGCGTGGTGGGTTCGTAAGTGCATTGTTCTTCCTCGCGCGGGGTTATGGCTGTAAAATCTTGATGGATATATTGGAAGAGTACAATCAGCTTTTGCATCACATCATTC

Network for GWHGAAZE002470

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03924.14	CHASE	284	478	4.00E-36
PF00512.26	HisKA	566	631	1.60E-16
PF02518.27	HATPase_c	678	847	1.30E-31
PF00072.25	Response_reg	1031	1150	4.40E-21

Protein Sequence

>GWHPAAZE002472
MSLNCKFSGLNSKSSANFKVKKAQEPLGGSNYFGWFGWKWTVLFFMWILVVVIGLFWVSYGSKYGALRGEVDIELSLGEAPILQHFNVSREQLHALVSSFFESDQITSFKCTKLSRYEKPICALKLPGPQNKGLDKENGWVADNIEPKDQCFVQDENIRMKFDLSLPKDNALSLVLQPTSSSILSNCHSCEEVKLQQQAQSSLRSAGKWRKKLLIMFVLAGVTGSVWLFWHLNTDISFRRKETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFGAYTERTAFERPLTSGVAYALRVPHSERERFEKQQGWTIKKMETEDQTLVQDCTPENLDPSPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKAVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATAEQCINATVGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNKSAPINMYGSNVTDTGLLHSSSLDFGDPTRKHEMHCRFKQVPPPPWTAIAASVGVLVITLLLGHIFHAAINQIAKVEHDYREMMELKHRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTNLDANQLDYAQTAHASGKDLISLINEVLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAIYVSDQVPEVVVGDPGRLRQIIANLVGNSIKFIQDKGHIFVSVHIAEEARPLNVKDEVLRQSLTSVQDWSNDSYNTLSGYPVVDRWKSWSHFESFNNTSLNEGTEVIKILVTVEDTGVGIPLEAQERIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFVSEPGTGSTFSFTANFAKGDLNSLETKSQQYHPAVSEFRGLRALVVDGKSIRAEVTRYHLQRLGISVDITYSVDSACSYLSSYSKTSSASAHLAMILVDKDTWNEKKGLSFHHLLKEFKPNEGKNLPELTPKTFLLATSTCSTMCNHLKSAGLVDNVLGKPLRLSALISCFQDTLRIGKKRQVKRGEPSTLGILLRGKQILVVDDNMVNRRVAEGALKKYGAIVTCVDSGKAGLRMLNPPHGFDACFMDLQMPEMDGFEATRQIRSLESKFNLSNEAHWHTPILAMTADVIQATNEECSKCGMDGYVAKPFQEEQLYSAAAPFFETG

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
K14489	AHK2_3_4	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0016310	biological_process	phosphorylation
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0007165	biological_process	signal transduction
GO:0016772	molecular_function	transferase activity, transferring phosphorus-containing groups
GO:0000155	molecular_function	phosphorelay sensor kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.764
	SRR3591706	second leaf	28.006
	SRR3591707	mature leaf	44.894
	SRR3591708	Shoot apex	41.189
	SRR3591709	Stem	49.163
	SRR3591710	White floral bud	34.452
	SRR3591711	White flower	47.552
	SRR3591712	Green floral bud	25.891
	SRR3591713	Yellow flower	44.526
SRP173429	SRR8316895	Juvenile bud stage	24.547
	SRR8316896	Juvenile bud stage	25.186
	SRR8316897	Juvenile bud stage	12.330
	SRR8316894	Third green stage	11.580
	SRR8316900	Third green stage	18.388
	SRR8316901	Third green stage	19.104
	SRR8316898	Complete white stage	4.410
	SRR8316899	Complete white stage	25.411
	SRR8316903	Complete white stage	13.458
	SRR8316902	Silver flowering stage	7.825
	SRR8316904	Silver flowering stage	16.291
	SRR8316905	Silver flowering stage	6.374
	SRR8316906	Gold flowering stage	32.512
	SRR8316907	Gold flowering stage	30.246
	SRR8316908	Gold flowering stage	42.484
SRP132670	SRR6706286	Control	26.389
	SRR6706287	Light intensity 50%	25.153
	SRR6706288	Light intensity 20%	26.082
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.436
	CNS0095593	Slightly white alabastrum(diploid) 2	12.037
	CNS0095594	Slightly white alabastrum(diploid) 3	12.051
	CNS0095595	Whole white alabastrum(diploid) 2	10.263
	CNS0095596	Whole white alabastrum(diploid) 3	6.551
	CNS0095597	Whole white alabastrum(diploid) 4	10.446
	CNS0095598	Silvery flower (diploied) 1	51.150
	CNS0095599	Silvery flower (diploied) 2	37.345
	CNS0095600	Silvery flower (diploied) 3	48.013
	CNS0095601	Golden flower (diploid) 1	38.553
	CNS0095602	Golden flower (diploid) 2	74.913
	CNS0095603	Golden flower (diploid) 3	72.338
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.462
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.086
	CNS0095606	Slightly white alabastrum(tetraploid) 3	51.263
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.654
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.881
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.475
	CNS0095610	Silvery flower (tetraploid) 1	53.386
	CNS0095611	Silvery flower (tetraploid) 2	56.651
	CNS0095612	Silvery flower (tetraploid) 3	29.070
	CNS0095613	Golden flower (tetraploid) 1	31.350
	CNS0095614	Golden flower (tetraploid) 2	65.218
	CNS0095615	Golden flower (tetraploid) 3	54.438
CRA001975	CRR073297	Stem 1	29.484
	CRR073298	Stem 2	24.845
	CRR073299	Stem 3	20.500
	CRR073300	Leaf 1	17.224
	CRR073301	Leaf 2	16.152
	CRR073302	Leaf 3	10.104
	CRR073303	Juvenile bud 1	9.379
	CRR073304	Juvenile bud 2	6.788
	CRR073305	Juvenile bud 3	16.349
	CRR073306	Third green 1	4.641
	CRR073307	Third green 2	3.770
	CRR073308	Third green 3	5.967
	CRR073309	Second white 1	3.658
	CRR073310	Second white 2	7.108
	CRR073311	Second white 3	10.286
	CRR073312	Silver flowering 1	8.792
	CRR073313	Silver flowering 2	7.013
	CRR073314	Silver flowering 3	8.283
	CRR073315	Gold flowering 1	9.179
	CRR073316	Gold flowering 2	20.743
	CRR073317	Gold flowering 3	6.621
	CRR073318	Tawny withering 1	17.438
	CRR073319	Tawny withering 2	14.864
	CRR073320	Tawny withering 3	15.585