Gene detail

Detail information of GWHGAAZE002486

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010252773.1	0	PREDICTED: NAD-dependent protein deacetylase SRT1 isoform X1 [Nelumbo nucifera]
COG	YP_759609.1	4E-24	Sir2 family transcriptional regulator
Swissprot	tr\|Q9FE17\|SIR1_ARATH	6E-172	NAD-dependent protein deacetylase SRT1
trEMBL	tr\|A0A068VI10\|A0A068VI10_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_966 {ECO:0000313\|EMBL:CDP20179.1}
TAIR10	AT5G55760.1	2E-140	sirtuin 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	79709616	79718501	+
GWHAAZE00000001	mRNA	79709616	79718501	+
GWHAAZE00000001	exon	79709616	79709762	+
GWHAAZE00000001	exon	79712064	79712219	+
GWHAAZE00000001	exon	79713262	79713362	+
GWHAAZE00000001	exon	79713483	79713591	+
GWHAAZE00000001	exon	79714832	79714911	+
GWHAAZE00000001	exon	79715636	79715714	+
GWHAAZE00000001	exon	79716043	79716096	+
GWHAAZE00000001	exon	79716513	79716612	+
GWHAAZE00000001	exon	79716853	79716935	+
GWHAAZE00000001	exon	79717032	79717099	+
GWHAAZE00000001	exon	79717255	79717357	+
GWHAAZE00000001	exon	79718178	79718501	+
GWHAAZE00000001	CDS	79709616	79709762	+
GWHAAZE00000001	CDS	79712064	79712219	+
GWHAAZE00000001	CDS	79713262	79713362	+
GWHAAZE00000001	CDS	79713483	79713591	+
GWHAAZE00000001	CDS	79714832	79714911	+
GWHAAZE00000001	CDS	79715636	79715714	+
GWHAAZE00000001	CDS	79716043	79716096	+
GWHAAZE00000001	CDS	79716513	79716612	+
GWHAAZE00000001	CDS	79716853	79716935	+
GWHAAZE00000001	CDS	79717032	79717099	+
GWHAAZE00000001	CDS	79717255	79717357	+
GWHAAZE00000001	CDS	79718178	79718501	+

Transcript Sequence
>GWHTAAZE002490 ATGTCACTAGGCTACGCAGAGAAACTCTCCTACAAGGAAGACGTGGGCACTGTCGGAATGTCTGAACTTTTCGATCCTCCCCTTCTTTTGCAACAAAAAGTCTGTTTTCTTTTCTTTATTTCTCATCATCTTATTTATACTTTCCACCATTTGCAAACGAATAAATTAATATCATATTACCATCTTAGTCGGTTTCATCTGTACTTGCAGAGTAACCATCTAGTGGCATTTACTGGTGCTGGAATTTCAACTTCATGTGGTATACCCGACTTTCGAGGTCCCAAAGGAGTTTGGACATGCCAGAATGTAGATAGCCTACATCTTAGATCGGGAATACCAAGAGAGAAGCTTGCAGAGTTACATGGGAATTCATTTAGGGAACTTTGCCCATCATGTGGCACAGAGTATGTGCGGGATTTTGAAGTGGAGACTATTGGGATGAAGGAGACATCACGGCGTTGTTCTGATGCAAAGTGTGGGGCAAAACTTAAGGATACTGTTCTTGATTGGGAGGACGCGTTGCCCCTAAAAGAGATGAACGCGGCAGAAAAGCACTGTCGGATGGCTGATATTGTGTTATGTTTGGGGACCAGTTTGCAGATAACTCCAGCTTGCAACCTTCCTTTAAAATGTCTCCGTGGTGGAGGGAAAGTCATAATTGTCAACCTTCAGCAAACTCCAAAAGATAAGAAAGCAAGCTTGGTGATTCACGGACTTGTTGACAAGGTAATTACAGGGGTAATGTACTTTCTTAATATGCGGATTCCTCCATATGTTCGAGTTGATCTTTTCCAGATTATTTTTAGTCAGTATCGCTGCATTTCAGAGAGAAGGTGTGCAAGATGGTCCCTCAGAGTTACTAGTGTAAATGGAGAAAAAGCTCCACTACCTTTTGTCAAATCAGTTAAGATTTCCTTCCCAGAGAGGCCAGAACTGAAAACGGCTCTGTTAAAGCAGCAACCTTTTTTGCTGAAAAGGGAAACACTTAAAACAAATCCACTTAAAATAGTTCTAAAGCTTAATTTCAGTGACGGTTGTGGCTGTCAGTTCACCAGGATTGAGGTACCTATTGATTTTCAGGTACCCACAGACAATCTTAACCAAGATAAGAACATCGTGATCGAGAATCTCAGGGACACAGCAATCCAAGAAAAATGCTGTGGGCAGTTTTCACTGGTGGAGAGAAAGTTCATTCCAGACCCGAAAAAGGAAATTGCAGTCTATGCAGTTGCTACAAATATTGTCATGTACAATGTTTTTCCGGAAAACTTGGATTTGTTGAAGCCCAATCTTGAAGGTAAGAGACAGAGAAAAGATGCCAATCTCGATAGCAAGGACAAGTTGAAGTGGCATGAGGATTTGAAGGCCAAGCAGGTGCCTTTAAAGAAACTGAAAGCTTACTAA

Network for GWHGAAZE002486

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02146.18	SIR2	79	99	5.90E-05
PF02146.18	SIR2	100	203	1.10E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11416	SIRT6, SIR2L6	Metabolic pathways	map01100
		Nicotinate and nicotinamide metabolism	map00760
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0070403	molecular_function	NAD+ binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.972
	SRR3591706	second leaf	1.831
	SRR3591707	mature leaf	1.449
	SRR3591708	Shoot apex	5.071
	SRR3591709	Stem	1.122
	SRR3591710	White floral bud	5.854
	SRR3591711	White flower	6.240
	SRR3591712	Green floral bud	8.899
	SRR3591713	Yellow flower	2.782
SRP173429	SRR8316895	Juvenile bud stage	4.229
	SRR8316896	Juvenile bud stage	5.953
	SRR8316897	Juvenile bud stage	2.172
	SRR8316894	Third green stage	2.996
	SRR8316900	Third green stage	8.824
	SRR8316901	Third green stage	8.813
	SRR8316898	Complete white stage	1.124
	SRR8316899	Complete white stage	3.724
	SRR8316903	Complete white stage	2.162
	SRR8316902	Silver flowering stage	2.202
	SRR8316904	Silver flowering stage	3.890
	SRR8316905	Silver flowering stage	1.273
	SRR8316906	Gold flowering stage	4.014
	SRR8316907	Gold flowering stage	3.768
	SRR8316908	Gold flowering stage	3.588
SRP132670	SRR6706286	Control	4.997
	SRR6706287	Light intensity 50%	6.814
	SRR6706288	Light intensity 20%	6.600
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.764
	CNS0095593	Slightly white alabastrum(diploid) 2	4.965
	CNS0095594	Slightly white alabastrum(diploid) 3	5.479
	CNS0095595	Whole white alabastrum(diploid) 2	5.139
	CNS0095596	Whole white alabastrum(diploid) 3	4.891
	CNS0095597	Whole white alabastrum(diploid) 4	4.007
	CNS0095598	Silvery flower (diploied) 1	2.411
	CNS0095599	Silvery flower (diploied) 2	1.900
	CNS0095600	Silvery flower (diploied) 3	2.379
	CNS0095601	Golden flower (diploid) 1	2.889
	CNS0095602	Golden flower (diploid) 2	2.204
	CNS0095603	Golden flower (diploid) 3	2.315
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.744
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.268
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.712
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.250
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.307
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.001
	CNS0095610	Silvery flower (tetraploid) 1	2.981
	CNS0095611	Silvery flower (tetraploid) 2	2.760
	CNS0095612	Silvery flower (tetraploid) 3	1.500
	CNS0095613	Golden flower (tetraploid) 1	1.545
	CNS0095614	Golden flower (tetraploid) 2	2.700
	CNS0095615	Golden flower (tetraploid) 3	2.484
CRA001975	CRR073297	Stem 1	7.345
	CRR073298	Stem 2	7.816
	CRR073299	Stem 3	2.289
	CRR073300	Leaf 1	14.948
	CRR073301	Leaf 2	9.763
	CRR073302	Leaf 3	2.974
	CRR073303	Juvenile bud 1	1.020
	CRR073304	Juvenile bud 2	1.617
	CRR073305	Juvenile bud 3	1.135
	CRR073306	Third green 1	5.551
	CRR073307	Third green 2	3.074
	CRR073308	Third green 3	3.197
	CRR073309	Second white 1	3.246
	CRR073310	Second white 2	4.916
	CRR073311	Second white 3	4.089
	CRR073312	Silver flowering 1	3.485
	CRR073313	Silver flowering 2	3.240
	CRR073314	Silver flowering 3	3.601
	CRR073315	Gold flowering 1	1.431
	CRR073316	Gold flowering 2	0.900
	CRR073317	Gold flowering 3	0.638
	CRR073318	Tawny withering 1	0.262
	CRR073319	Tawny withering 2	0.776
	CRR073320	Tawny withering 3	0.873