Gene detail

Detail information of GWHGAAZE002498

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265275.1	0	PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Vitis vinifera]
COG	YP_003886564.1	3E-104	indole-3-glycerol-phosphate synthase
Swissprot	tr\|P49572\|TRPC_ARATH	3E-164	Indole-3-glycerol phosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|D7TD92\|D7TD92_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28465.3}
TAIR10	AT5G48220.1	5E-136	Aldolase-type TIM barrel family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	79927225	79932232	-
GWHAAZE00000001	mRNA	79927225	79932232	-
GWHAAZE00000001	exon	79927225	79927317	-
GWHAAZE00000001	exon	79927737	79927805	-
GWHAAZE00000001	exon	79927974	79928056	-
GWHAAZE00000001	exon	79928523	79928601	-
GWHAAZE00000001	exon	79929153	79929317	-
GWHAAZE00000001	exon	79929421	79929465	-
GWHAAZE00000001	exon	79929600	79929674	-
GWHAAZE00000001	exon	79930189	79930332	-
GWHAAZE00000001	exon	79930775	79931035	-
GWHAAZE00000001	exon	79932050	79932232	-
GWHAAZE00000001	CDS	79932050	79932232	-
GWHAAZE00000001	CDS	79930775	79931035	-
GWHAAZE00000001	CDS	79930189	79930332	-
GWHAAZE00000001	CDS	79929600	79929674	-
GWHAAZE00000001	CDS	79929421	79929465	-
GWHAAZE00000001	CDS	79929153	79929317	-
GWHAAZE00000001	CDS	79928523	79928601	-
GWHAAZE00000001	CDS	79927974	79928056	-
GWHAAZE00000001	CDS	79927737	79927805	-
GWHAAZE00000001	CDS	79927225	79927317	-

Transcript Sequence
>GWHTAAZE002502 ATGGAAGGTGTGATGTCGTTGAGAGCTTCACATGGGGTTTCGTTTCAGTCCTTTCCATCTTCCCTCGATCACACTCACACTCACAGACCTAAATTATTCAATAATTTCACATTTGGAAGCTCATTTCCAATTCCACGGACTGGCAGCAAGCTCTCCTCTCGTTCCCATATTCAACCTTCAAAGTCTGAGTTAAAGGATGGATCTGTCGGGGTTTCTCCAGCTAGTGATTCTGAAGGAGGTGCACCCAAAGTTGAAGAGTGGGAAGTTGGGAAATTCCACAATGCAGTAGCTGCAAGCCAAGATATAAGAATTAGAAGACGGCCACCGACAGGGCCTCCTTTGCATTATGTAGGTCCATTTGAGTTCCGCTTGCAGAATGAAGGCAACACTCCTCGTAATATATTAGAGGAAATTATATGGAACAAGGACAAGGAAGTTGCACAGAGAGCTCTTGATGTTACTCCTCCTGCTAGAGACTTTATTGGAGCTCTTAAGGAATCAAACTTAAGAACTGGATTGCCTGGTCTAATTGCTGAAGTTAAAAAGGCTTCTCCTAGTAGAGGAGTTTTAAGAGAAGATTTTGACGCAGTTGAAATTGCCAAAGCTTATGAAAGAGGCGGAGCTGCATGCCTCAGTGTTTTGACAGACACGAAATTTTTCCAGGGAAGCTTTGAAAATCTAGAGAACATACGGAAAGCTGGAGTAAAGTGTCCTCTGTTGTGCAAAGATTTTATTGTAGACGCATGGCAAATTTACCATGCTCGAGGTAAAGGAGCTGATGCAATTCTGTTAATTGCTGCTGTTTTACCAGATCTTGACATCAAATATATGACTAAGATTTGCAAGTTGCTTCGCATGACTGCGCTTGTTGAGGTACATAATGAGAGGGAGATGGACCGCGTCCTTGGAATAGCTGGAATTGAACTTATTGGCATCAACAACCGTAACCTTGAAACATTTGAAGTTGATATTAGTAACACAAAGAAACTGCTTGATGGAGAACATGGACGGATAATCCGCGAGAAAAACATACTTGTGGTTGGGGAGTCTGGACTCTTCACTCCTGATGATATTGCTTATGTACAAGGAGCTGGTGTTAATGCCGTATTGGTTGGGGAGTCGCTTGTAAAACAGAAGGATCCTGCAAAGGGGATAACTGAACTTTTTGGGAAAGACATTTCTTCCTCACAACTCTAG

Network for GWHGAAZE002498

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00218.22	IGPS	148	388	5.10E-76

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01609	trpC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0006568	biological_process	tryptophan metabolic process
GO:0004425	molecular_function	indole-3-glycerol-phosphate synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.574
	SRR3591706	second leaf	30.231
	SRR3591707	mature leaf	27.726
	SRR3591708	Shoot apex	33.413
	SRR3591709	Stem	24.578
	SRR3591710	White floral bud	44.686
	SRR3591711	White flower	37.736
	SRR3591712	Green floral bud	46.892
	SRR3591713	Yellow flower	41.049
SRP173429	SRR8316895	Juvenile bud stage	22.897
	SRR8316896	Juvenile bud stage	28.631
	SRR8316897	Juvenile bud stage	15.010
	SRR8316894	Third green stage	17.922
	SRR8316900	Third green stage	47.356
	SRR8316901	Third green stage	40.203
	SRR8316898	Complete white stage	19.009
	SRR8316899	Complete white stage	56.682
	SRR8316903	Complete white stage	26.629
	SRR8316902	Silver flowering stage	13.252
	SRR8316904	Silver flowering stage	20.247
	SRR8316905	Silver flowering stage	9.336
	SRR8316906	Gold flowering stage	33.247
	SRR8316907	Gold flowering stage	27.768
	SRR8316908	Gold flowering stage	32.491
SRP132670	SRR6706286	Control	37.763
	SRR6706287	Light intensity 50%	39.616
	SRR6706288	Light intensity 20%	44.623
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.209
	CNS0095593	Slightly white alabastrum(diploid) 2	20.924
	CNS0095594	Slightly white alabastrum(diploid) 3	20.442
	CNS0095595	Whole white alabastrum(diploid) 2	24.479
	CNS0095596	Whole white alabastrum(diploid) 3	24.173
	CNS0095597	Whole white alabastrum(diploid) 4	22.654
	CNS0095598	Silvery flower (diploied) 1	26.332
	CNS0095599	Silvery flower (diploied) 2	19.035
	CNS0095600	Silvery flower (diploied) 3	18.176
	CNS0095601	Golden flower (diploid) 1	15.479
	CNS0095602	Golden flower (diploid) 2	16.475
	CNS0095603	Golden flower (diploid) 3	13.823
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.194
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.347
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.707
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.650
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.886
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.888
	CNS0095610	Silvery flower (tetraploid) 1	24.364
	CNS0095611	Silvery flower (tetraploid) 2	21.984
	CNS0095612	Silvery flower (tetraploid) 3	32.237
	CNS0095613	Golden flower (tetraploid) 1	13.071
	CNS0095614	Golden flower (tetraploid) 2	17.041
	CNS0095615	Golden flower (tetraploid) 3	9.190
CRA001975	CRR073297	Stem 1	31.610
	CRR073298	Stem 2	29.998
	CRR073299	Stem 3	28.341
	CRR073300	Leaf 1	26.878
	CRR073301	Leaf 2	21.429
	CRR073302	Leaf 3	26.126
	CRR073303	Juvenile bud 1	23.312
	CRR073304	Juvenile bud 2	19.580
	CRR073305	Juvenile bud 3	20.258
	CRR073306	Third green 1	7.171
	CRR073307	Third green 2	5.701
	CRR073308	Third green 3	6.098
	CRR073309	Second white 1	15.901
	CRR073310	Second white 2	11.873
	CRR073311	Second white 3	14.100
	CRR073312	Silver flowering 1	9.934
	CRR073313	Silver flowering 2	6.459
	CRR073314	Silver flowering 3	8.540
	CRR073315	Gold flowering 1	40.228
	CRR073316	Gold flowering 2	64.202
	CRR073317	Gold flowering 3	35.201
	CRR073318	Tawny withering 1	13.132
	CRR073319	Tawny withering 2	14.976
	CRR073320	Tawny withering 3	17.002