Gene detail

Detail information of GWHGAAZE002499

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006447826.1	0	hypothetical protein CICLE_v10014974mg [Citrus clementina]
Swissprot	tr\|P94026\|RBCMT_TOBAC	6E-27	Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic (Precursor)
trEMBL	tr\|V4UFJ6\|V4UFJ6_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR61066.1}
TAIR10	AT3G07670.1	0	Rubisco methyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	79934993	79940177	-
GWHAAZE00000001	mRNA	79934993	79940177	-
GWHAAZE00000001	exon	79934993	79935172	-
GWHAAZE00000001	exon	79935326	79935457	-
GWHAAZE00000001	exon	79935901	79936003	-
GWHAAZE00000001	exon	79936194	79936366	-
GWHAAZE00000001	exon	79936609	79936689	-
GWHAAZE00000001	exon	79936769	79936855	-
GWHAAZE00000001	exon	79937107	79937160	-
GWHAAZE00000001	exon	79937514	79937571	-
GWHAAZE00000001	exon	79937718	79937801	-
GWHAAZE00000001	exon	79938235	79938398	-
GWHAAZE00000001	exon	79939788	79940177	-
GWHAAZE00000001	CDS	79939788	79940177	-
GWHAAZE00000001	CDS	79938235	79938398	-
GWHAAZE00000001	CDS	79937718	79937801	-
GWHAAZE00000001	CDS	79937514	79937571	-
GWHAAZE00000001	CDS	79937107	79937160	-
GWHAAZE00000001	CDS	79936769	79936855	-
GWHAAZE00000001	CDS	79936609	79936689	-
GWHAAZE00000001	CDS	79936194	79936366	-
GWHAAZE00000001	CDS	79935901	79936003	-
GWHAAZE00000001	CDS	79935326	79935457	-
GWHAAZE00000001	CDS	79934993	79935172	-

Transcript Sequence
>GWHTAAZE002503 ATGGCCGAAGCTTCTAGAATATTCCACACAACACTCCTCCCCACTTTCTCCCAAAACCCTACTACTCCACCCGTCAAAACCTCCTCAATCCACACTCTACCTCTCTCCCGCAGAACCAAAATCCGCTGCTCCTCAATCTCCACCAGTAGCAACAGCAACACCGCTCGAACCACCGCCGCACCACAGCCGATTCCGTGGGGCTGCGAGATCGACTCGCTGGAGAACGCTTCGGCGCTGCAGAAATGGCTGTCGGAGTCCGGCCTACCTCCGCAAAAGATGGACATAGAGAAAGTGGACGTTGGGGAGAGAGGACTCGTTGCCCTAACTAACATTCGCAAGGGAGAGAAGTTGCTGTTTGTGCCTCCCTCGTTAGTCATCAATGCTGATTCGGAGTGGAGCTTCCCCGAGGCTGGTAAAGTATTAAAACAAAATAATGTACCTGACTGGCCATTGCTCGCAGCCTACCTAATAAGTGAGGCAAGTCTCATGAAATCTTCAAGATGGAGTAACTATATCTCAGCCTTGCCTAGGCAGCCATACTCACTTTTGTACTGGACTCGTTCAGAGCTTGATAGGTATCTAGAAGCGTCACAAATTAGAGAGCGGGCAATTGAAAGGATTAATGGTGTTACTGGAACATACAATGACTTAAGACTAAGGATATTTTCCAAGTATCCTCATTTATTTCCCGAGGAGGTGTACAATATGGAAACTTTTAAATGGTCATTTGGCATTCTTTTTTCTCGCTTGGTCCGTTTGCCCTCATTGGATGGAAGGGTTGCTTTGGTTCCTTGGGCAGATATGCTTAATCATAGTTGTGAGGCATGTGAAAGACCAGTGGAAACATTTTTGGATTACGATAAGTCAACGAAGGGTGTTGTATTTACAACTGATCGGCCGTATCAGCCAGGTGAGCAGGTTTTCATATCATATGGAAAGAAATCTAATGGTGAGCTTTTGCTGTCATATGGATTTGTTCCTAGAGAGGGTACCAACCCCAGTGATTCAGTTGAGTTGCCCGTATCGCTGAAAAAATCTGATAAATGCTATAAGGAGAAGATGGAAGTTTTGAAGAAGTATGGCTTGTCCAAGTCAGAATGTTTTCCTTTACAAATCACTGGTTGGCCATTGGAATTGATGGCATATGCTTATCTAGTAGTCAGTCCCCCAAGCATGAGCAGTCAGTTTGAAGAGATGGCTGCTGCGGCTTCAAATAACACAAGAGCCAAGAAGGATATAAGATACCCAGAATTAGACGAAGAAGCATTTCAATTTATTTTGGATAGTTGCGAGTCCAGCATATCAAAGTACACCAAGTTCCTTCAGGCAAGTGGAACGATGGATGTGGATGTGACATTACCTAAGCAACTCAACAGAAAATTGTTCTTGAAACAACTAGCTGTAGACTTATGTACCAGTGAGCGGAGGATACTATTTCGTGCCCAATATGTGAGGATATATCTTCTCTATTTCTGCAATTTGATTAACTTGATATCTATAACTTAA

Network for GWHGAAZE002499

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.29	SET	103	312	2.20E-15
PF09273.12	Rubis-subs-bind	346	478	3.70E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0009507	cellular_component	chloroplast
GO:0005515	molecular_function	protein binding
GO:0030785	molecular_function	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.578
	SRR3591706	second leaf	42.197
	SRR3591707	mature leaf	45.092
	SRR3591708	Shoot apex	31.454
	SRR3591709	Stem	9.237
	SRR3591710	White floral bud	5.806
	SRR3591711	White flower	9.062
	SRR3591712	Green floral bud	7.244
	SRR3591713	Yellow flower	6.282
SRP173429	SRR8316895	Juvenile bud stage	10.033
	SRR8316896	Juvenile bud stage	12.750
	SRR8316897	Juvenile bud stage	7.983
	SRR8316894	Third green stage	4.851
	SRR8316900	Third green stage	14.433
	SRR8316901	Third green stage	12.755
	SRR8316898	Complete white stage	3.971
	SRR8316899	Complete white stage	11.477
	SRR8316903	Complete white stage	6.455
	SRR8316902	Silver flowering stage	6.164
	SRR8316904	Silver flowering stage	8.295
	SRR8316905	Silver flowering stage	4.843
	SRR8316906	Gold flowering stage	13.857
	SRR8316907	Gold flowering stage	14.093
	SRR8316908	Gold flowering stage	13.137
SRP132670	SRR6706286	Control	8.894
	SRR6706287	Light intensity 50%	8.601
	SRR6706288	Light intensity 20%	8.833
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.280
	CNS0095593	Slightly white alabastrum(diploid) 2	8.957
	CNS0095594	Slightly white alabastrum(diploid) 3	8.768
	CNS0095595	Whole white alabastrum(diploid) 2	8.362
	CNS0095596	Whole white alabastrum(diploid) 3	7.869
	CNS0095597	Whole white alabastrum(diploid) 4	5.430
	CNS0095598	Silvery flower (diploied) 1	19.464
	CNS0095599	Silvery flower (diploied) 2	14.298
	CNS0095600	Silvery flower (diploied) 3	12.714
	CNS0095601	Golden flower (diploid) 1	16.154
	CNS0095602	Golden flower (diploid) 2	14.041
	CNS0095603	Golden flower (diploid) 3	12.042
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.505
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.012
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.873
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.321
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.029
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.684
	CNS0095610	Silvery flower (tetraploid) 1	13.960
	CNS0095611	Silvery flower (tetraploid) 2	19.606
	CNS0095612	Silvery flower (tetraploid) 3	18.730
	CNS0095613	Golden flower (tetraploid) 1	9.412
	CNS0095614	Golden flower (tetraploid) 2	12.550
	CNS0095615	Golden flower (tetraploid) 3	9.064
CRA001975	CRR073297	Stem 1	14.239
	CRR073298	Stem 2	12.307
	CRR073299	Stem 3	9.040
	CRR073300	Leaf 1	9.615
	CRR073301	Leaf 2	7.853
	CRR073302	Leaf 3	5.195
	CRR073303	Juvenile bud 1	7.230
	CRR073304	Juvenile bud 2	5.283
	CRR073305	Juvenile bud 3	6.385
	CRR073306	Third green 1	1.428
	CRR073307	Third green 2	1.304
	CRR073308	Third green 3	2.572
	CRR073309	Second white 1	6.735
	CRR073310	Second white 2	5.157
	CRR073311	Second white 3	5.757
	CRR073312	Silver flowering 1	3.361
	CRR073313	Silver flowering 2	2.530
	CRR073314	Silver flowering 3	3.432
	CRR073315	Gold flowering 1	28.796
	CRR073316	Gold flowering 2	38.737
	CRR073317	Gold flowering 3	20.549
	CRR073318	Tawny withering 1	3.693
	CRR073319	Tawny withering 2	3.929
	CRR073320	Tawny withering 3	4.803