Detail information of GWHGAAZE002506


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009768363.10PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Nicotiana sylvestris]
Swissprottr|Q9LUA9|COL10_ARATH3E-140Zinc finger protein CONSTANS-LIKE 10
trEMBLtr|A0A061DL86|A0A061DL86_THECC0B-box type zinc finger protein with CCT domain isoform 1 {ECO:0000313|EMBL:EOX93574.1}
TAIR10AT5G48250.11E-94B-box type zinc finger protein with CCT domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8006280880065506-
GWHAAZE00000001mRNA8006280880065506-
GWHAAZE00000001exon8006492280065506-
GWHAAZE00000001exon8006441580064633-
GWHAAZE00000001exon8006364680063941-
GWHAAZE00000001exon8006280880062937-
GWHAAZE00000001CDS8006492280065506-
GWHAAZE00000001CDS8006441580064633-
GWHAAZE00000001CDS8006364680063941-
GWHAAZE00000001CDS8006280880062937-
Transcript Sequence

Network for GWHGAAZE002506

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06203.15CCT3523941.00E-15
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-CO-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.250
SRR3591706second leaf0.617
SRR3591707mature leaf0.560
SRR3591708Shoot apex2.570
SRR3591709Stem1.738
SRR3591710White floral bud96.355
SRR3591711White flower49.858
SRR3591712Green floral bud35.630
SRR3591713Yellow flower17.325
SRP173429 SRR8316895Juvenile bud stage 2.606
SRR8316896Juvenile bud stage 3.087
SRR8316897Juvenile bud stage 1.234
SRR8316894Third green stage 2.340
SRR8316900Third green stage 7.569
SRR8316901Third green stage 6.094
SRR8316898Complete white stage 14.008
SRR8316899Complete white stage 15.274
SRR8316903Complete white stage 22.366
SRR8316902Silver flowering stage10.688
SRR8316904Silver flowering stage16.254
SRR8316905Silver flowering stage8.064
SRR8316906Gold flowering stage 3.570
SRR8316907Gold flowering stage 5.412
SRR8316908Gold flowering stage 4.332
SRP132670SRR6706286Control2.455
SRR6706287Light intensity 50%2.834
SRR6706288Light intensity 20%3.207
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.401
CNS0095593Slightly white alabastrum(diploid) 23.446
CNS0095594Slightly white alabastrum(diploid) 32.472
CNS0095595Whole white alabastrum(diploid) 23.522
CNS0095596Whole white alabastrum(diploid) 33.826
CNS0095597Whole white alabastrum(diploid) 44.489
CNS0095598Silvery flower (diploied) 17.346
CNS0095599Silvery flower (diploied) 22.055
CNS0095600Silvery flower (diploied) 314.938
CNS0095601Golden flower (diploid) 11.562
CNS0095602Golden flower (diploid) 25.491
CNS0095603Golden flower (diploid) 35.540
CNS0095604Slightly white alabastrum(tetraploid) 14.897
CNS0095605Slightly white alabastrum(tetraploid) 23.497
CNS0095606Slightly white alabastrum(tetraploid) 34.535
CNS0095607Whole white alabastrum(tetraploid) 13.562
CNS0095608Whole white alabastrum(tetraploid) 23.688
CNS0095609Whole white alabastrum(tetraploid) 34.643
CNS0095610Silvery flower (tetraploid) 18.932
CNS0095611Silvery flower (tetraploid) 225.096
CNS0095612Silvery flower (tetraploid) 3316.504
CNS0095613Golden flower (tetraploid) 17.660
CNS0095614Golden flower (tetraploid) 23.125
CNS0095615Golden flower (tetraploid) 35.931
CRA001975CRR073297Stem 146.738
CRR073298Stem 249.177
CRR073299Stem 348.220
CRR073300Leaf 168.029
CRR073301Leaf 268.978
CRR073302Leaf 348.370
CRR073303Juvenile bud 169.691
CRR073304Juvenile bud 270.282
CRR073305Juvenile bud 374.923
CRR073306Third green 149.982
CRR073307Third green 239.982
CRR073308Third green 352.564
CRR073309Second white 195.193
CRR073310Second white 277.190
CRR073311Second white 381.545
CRR073312Silver flowering 175.733
CRR073313Silver flowering 277.572
CRR073314Silver flowering 382.879
CRR073315Gold flowering 148.483
CRR073316Gold flowering 258.918
CRR073317Gold flowering 367.121
CRR073318Tawny withering 123.483
CRR073319Tawny withering 220.283
CRR073320Tawny withering 333.927