Gene detail

Detail information of GWHGAAZE002512

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP06144.1	2.45601E-69	unnamed protein product [Coffea canephora]
COG	YP_002463522.1	1E-11	small GTP-binding protein
Swissprot	tr\|P92963\|RAB1C_ARATH	3E-65	Ras-related protein RABB1c
trEMBL	tr\|A0A022QK30\|A0A022QK30_ERYGU	3E-74	Uncharacterized protein {ECO:0000313\|EMBL:EYU27628.1}
TAIR10	AT4G17170.1	2E-43	RAB GTPase homolog B1C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	80186019	80188925	+
GWHAAZE00000001	mRNA	80186019	80188925	+
GWHAAZE00000001	exon	80186019	80186023	+
GWHAAZE00000001	exon	80186487	80186682	+
GWHAAZE00000001	exon	80186886	80186968	+
GWHAAZE00000001	exon	80187071	80187136	+
GWHAAZE00000001	exon	80187269	80187342	+
GWHAAZE00000001	exon	80187748	80187995	+
GWHAAZE00000001	exon	80188110	80188238	+
GWHAAZE00000001	exon	80188743	80188925	+
GWHAAZE00000001	CDS	80186019	80186023	+
GWHAAZE00000001	CDS	80186487	80186682	+
GWHAAZE00000001	CDS	80186886	80186968	+
GWHAAZE00000001	CDS	80187071	80187136	+
GWHAAZE00000001	CDS	80187269	80187342	+
GWHAAZE00000001	CDS	80187748	80187995	+
GWHAAZE00000001	CDS	80188110	80188238	+
GWHAAZE00000001	CDS	80188743	80188925	+

Transcript Sequence
>GWHTAAZE002516 ATGAGCCATAGATGGCTGATTAAAATTGAAGCTCATGTGAGTTTTATTGTTTATTACACAGGGGTTGGAAAATCATGTCTTCTTCTGCAATTCACTGACAAGCGATTTCAGCCGGTCCATGATTTAACGATTGGGGTTGAGTTTGGGGCCAGAATGATCACAATCGACAACAAACCGATAAAGCTACAGATTTGGGACACAGCGGGTCAAGAATCATTCAGGTCTATAACAAGGTCCTACTACAGGGGGGCTGCTGGTGCACTGCTGGTGTACGATATCACTAGACATGCATATGCTCTCAAAATGTTACATGATTATGCACCTCCGAGTCTTATTTGTCATTTGCCACGGTTAAGTTTTGTTGTATCTTCTGAGGCTTATGAGTTAAGGAAGTGTGATATAAGCAACACCTTGTATTGGCATTTTGGAATACAGAAAGATTTAATTTGTTTCATACATTTATTCAGGAGGGAAACCTTCAATCACCTTGCTAGCTGGTTGGAGGACGCTAGGCAGCATGCGAATGCAAACATGACTATCATGCTTATTGGCAACAAGTGTGATCTTGCTCACAGAAGAGCCGTAAGCACGGAGGAAGGCGAACAATTTGCAAAGGAAAATGGCCTTATATTCATGGAGGCCTCCGCCAAAACTGCCCAGAATGTTGAAGAGGCATTTATAAGCACGGCCTCAACAATATACAAGAAGATTCAGGACGGGTTTTTGATGTATCAAACGAGGTATTTTTACTCTCCTCGCTTTGTGTCTTTGCGAATTACATTTGCCTTGCCCGACATTTTGTTTATGATGTCATATCATTATAGGTCTGTATTATATGATATGTATCGTTTTATCCTTCATCCTCTTGTTTACTGGATTATATTTTTGCAGTCTTACGGGATAAAAGTTGGATATGGTGGCATCCCCGGGCCGTCAGGAGGAAGAGATGGTGCCACTGCACCGGGAGGCGGTTGTTGCAATTAA

Network for GWHGAAZE002512

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	19	97	1.30E-28
PF00071.23	Ras	149	234	2.10E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07877	RAB2A	AMPK signaling pathway	map04152

Gene Ontology

GO term	Ontology	Name
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.621
	SRR3591706	second leaf	46.479
	SRR3591707	mature leaf	38.989
	SRR3591708	Shoot apex	44.325
	SRR3591709	Stem	63.651
	SRR3591710	White floral bud	80.019
	SRR3591711	White flower	84.069
	SRR3591712	Green floral bud	66.092
	SRR3591713	Yellow flower	93.584
SRP173429	SRR8316895	Juvenile bud stage	24.478
	SRR8316896	Juvenile bud stage	42.938
	SRR8316897	Juvenile bud stage	21.247
	SRR8316894	Third green stage	17.701
	SRR8316900	Third green stage	57.060
	SRR8316901	Third green stage	55.681
	SRR8316898	Complete white stage	35.976
	SRR8316899	Complete white stage	84.019
	SRR8316903	Complete white stage	46.442
	SRR8316902	Silver flowering stage	32.906
	SRR8316904	Silver flowering stage	38.099
	SRR8316905	Silver flowering stage	22.064
	SRR8316906	Gold flowering stage	91.011
	SRR8316907	Gold flowering stage	77.747
	SRR8316908	Gold flowering stage	111.995
SRP132670	SRR6706286	Control	98.220
	SRR6706287	Light intensity 50%	99.510
	SRR6706288	Light intensity 20%	101.468
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.134
	CNS0095593	Slightly white alabastrum(diploid) 2	43.319
	CNS0095594	Slightly white alabastrum(diploid) 3	45.585
	CNS0095595	Whole white alabastrum(diploid) 2	40.714
	CNS0095596	Whole white alabastrum(diploid) 3	42.035
	CNS0095597	Whole white alabastrum(diploid) 4	46.569
	CNS0095598	Silvery flower (diploied) 1	32.260
	CNS0095599	Silvery flower (diploied) 2	35.922
	CNS0095600	Silvery flower (diploied) 3	52.998
	CNS0095601	Golden flower (diploid) 1	32.107
	CNS0095602	Golden flower (diploid) 2	44.643
	CNS0095603	Golden flower (diploid) 3	47.003
	CNS0095604	Slightly white alabastrum(tetraploid) 1	48.015
	CNS0095605	Slightly white alabastrum(tetraploid) 2	50.192
	CNS0095606	Slightly white alabastrum(tetraploid) 3	64.854
	CNS0095607	Whole white alabastrum(tetraploid) 1	55.077
	CNS0095608	Whole white alabastrum(tetraploid) 2	55.479
	CNS0095609	Whole white alabastrum(tetraploid) 3	64.357
	CNS0095610	Silvery flower (tetraploid) 1	71.510
	CNS0095611	Silvery flower (tetraploid) 2	69.875
	CNS0095612	Silvery flower (tetraploid) 3	87.308
	CNS0095613	Golden flower (tetraploid) 1	79.784
	CNS0095614	Golden flower (tetraploid) 2	68.713
	CNS0095615	Golden flower (tetraploid) 3	136.981
CRA001975	CRR073297	Stem 1	32.687
	CRR073298	Stem 2	33.927
	CRR073299	Stem 3	34.911
	CRR073300	Leaf 1	45.974
	CRR073301	Leaf 2	43.928
	CRR073302	Leaf 3	44.038
	CRR073303	Juvenile bud 1	38.705
	CRR073304	Juvenile bud 2	41.917
	CRR073305	Juvenile bud 3	33.571
	CRR073306	Third green 1	48.463
	CRR073307	Third green 2	52.752
	CRR073308	Third green 3	40.505
	CRR073309	Second white 1	32.126
	CRR073310	Second white 2	37.949
	CRR073311	Second white 3	23.923
	CRR073312	Silver flowering 1	24.811
	CRR073313	Silver flowering 2	22.341
	CRR073314	Silver flowering 3	16.169
	CRR073315	Gold flowering 1	27.276
	CRR073316	Gold flowering 2	28.437
	CRR073317	Gold flowering 3	28.697
	CRR073318	Tawny withering 1	25.514
	CRR073319	Tawny withering 2	19.379
	CRR073320	Tawny withering 3	22.266