Gene detail

Detail information of GWHGAAZE002524

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002264437.1	1.4984E-120	PREDICTED: probable glutathione S-transferase [Vitis vinifera]
COG	YP_007067680.1	2E-25	glutathione S-transferase
Swissprot	tr\|Q03666\|GSTX4_TOBAC	4E-111	Probable glutathione S-transferase
trEMBL	tr\|F6HR78\|F6HR78_VITVI	6E-121	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57186.1}
TAIR10	AT1G78380.1	8E-86	glutathione S-transferase TAU 19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	80566742	80574452	-
GWHAAZE00000001	mRNA	80566742	80574452	-
GWHAAZE00000001	exon	80574138	80574452	-
GWHAAZE00000001	exon	80566742	80567083	-
GWHAAZE00000001	CDS	80574138	80574452	-
GWHAAZE00000001	CDS	80566742	80567083	-

Transcript Sequence
>GWHTAAZE002528 ATGTCGGACCATGTTGTTCTGTTGGATTCGTATCCAAGTATGTTTGGGATGAGGGTCAGAATTGCCTTAGCAGAAAAAGGGATAGAGTATGAGTACAAGGAGGAGGACTTGAGCAACAAGAGCCCTCTTCTTCTAAAGATGAACCCTGTTCACAAGAAGATTCCAGTTCTTATTCACAATGGAAGACCCGTGTGCGAATCGCTTGTCGAGGTTCAGTATATAGACGAGGTTTGGAAAGATAAGTCTCCTTTGTTGCCCTCTCACCCTCATCAGAGAGCTCAGGCTAGGTTTTGGGCTGATTATGTTGACAAGAAGATATATGATGCAGTGAGGAATATATGGACGACAAAAGGGGAAGAACAAGAAACAGCAAAGAAAGAACTCATAGATTACCTCAAAGTATTAGGAGGAGAACTTGGGGACAAGCCCTACTTTGGGGGAGAGTCCTTTGGGTTTGTGGACATTGCACTTTTGCCTTTCTCTACCTGGTTTTATGCCTATGAGACCCTTTGTAATTTCAGCATAGAGGCAAAGTGCCCGATATTAATGGCATGGGTCAACAGGTGCAAGGAGAAGGAGACTGTCTCTAAATCCCTTGCTAACCCTCACAAGGTCTATGAATATTTGCTTGGCATCAAGAAGAAATTTGGGATATAA

Network for GWHGAAZE002524

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0012

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02798.21	GST_N	9	76	1.20E-16
PF00043.26	GST_C	115	190	1.70E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00799	GST, gst	Metabolic pathways	map01100
		Glutathione metabolism	map00480
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982
		Drug metabolism - other enzymes	map00983
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.377
	SRR3591706	second leaf	0.125
	SRR3591707	mature leaf	0.042
	SRR3591708	Shoot apex	0.144
	SRR3591709	Stem	0.855
	SRR3591710	White floral bud	0.173
	SRR3591711	White flower	0.379
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.321
	SRR8316896	Juvenile bud stage	0.354
	SRR8316897	Juvenile bud stage	0.504
	SRR8316894	Third green stage	0.010
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.018
	SRR8316903	Complete white stage	0.117
	SRR8316902	Silver flowering stage	0.265
	SRR8316904	Silver flowering stage	0.097
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.868
	SRR8316907	Gold flowering stage	0.445
	SRR8316908	Gold flowering stage	0.810
SRP132670	SRR6706286	Control	0.071
	SRR6706287	Light intensity 50%	0.100
	SRR6706288	Light intensity 20%	0.079
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.116
	CNS0095593	Slightly white alabastrum(diploid) 2	1.069
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.738
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.197
	CNS0095598	Silvery flower (diploied) 1	1.738
	CNS0095599	Silvery flower (diploied) 2	3.266
	CNS0095600	Silvery flower (diploied) 3	0.719
	CNS0095601	Golden flower (diploid) 1	6.279
	CNS0095602	Golden flower (diploid) 2	3.327
	CNS0095603	Golden flower (diploid) 3	4.084
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.520
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.270
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.972
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.280
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.149
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.168
	CNS0095610	Silvery flower (tetraploid) 1	0.410
	CNS0095611	Silvery flower (tetraploid) 2	0.694
	CNS0095612	Silvery flower (tetraploid) 3	1.745
	CNS0095613	Golden flower (tetraploid) 1	1.963
	CNS0095614	Golden flower (tetraploid) 2	0.800
	CNS0095615	Golden flower (tetraploid) 3	0.052
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.223
	CRR073299	Stem 3	0.207
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.023
	CRR073303	Juvenile bud 1	0.099
	CRR073304	Juvenile bud 2	0.193
	CRR073305	Juvenile bud 3	0.240
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	1.084
	CRR073308	Third green 3	0.428
	CRR073309	Second white 1	0.856
	CRR073310	Second white 2	0.088
	CRR073311	Second white 3	0.244
	CRR073312	Silver flowering 1	0.144
	CRR073313	Silver flowering 2	0.510
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.620
	CRR073316	Gold flowering 2	0.484
	CRR073317	Gold flowering 3	0.572
	CRR073318	Tawny withering 1	2.557
	CRR073319	Tawny withering 2	6.033
	CRR073320	Tawny withering 3	2.559