Gene detail

Detail information of GWHGAAZE002531

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010062724.1	9.9971E-100	PREDICTED: probable glutathione S-transferase [Eucalyptus grandis]
COG	YP_001868965.1	1E-24	glutathione S-transferase domain-containing protein
Swissprot	tr\|Q03666\|GSTX4_TOBAC	3E-96	Probable glutathione S-transferase
trEMBL	tr\|A0A059BUR1\|A0A059BUR1_EUCGR	4E-100	Uncharacterized protein {ECO:0000313\|EMBL:KCW69857.1}
TAIR10	AT1G78340.1	4E-69	glutathione S-transferase TAU 22

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	80692725	80693947	-
GWHAAZE00000001	mRNA	80692725	80693947	-
GWHAAZE00000001	exon	80692725	80693054	-
GWHAAZE00000001	exon	80693633	80693947	-
GWHAAZE00000001	CDS	80693633	80693947	-
GWHAAZE00000001	CDS	80692725	80693054	-

Transcript Sequence
>GWHTAAZE002535 ATGCCGGAGGAAGTGATTCTTTTAGATTTCTGGGCTAGCCCTTTCGGGATGAGGGTGAGGATAGCACTAGCAGAGAAGGGAATTAAGTACCAGTGCAAGGAAGAGAAGTTGGATAACAAGAGCCAGCTTCTCCTCAAGGCCAACCCTGTTAACAAGCAGATCCCTGTTTTGATCCACAATGGAAAAGCTGTGTGCGAATCGACCATCATTTTGGAGTACATTGATGAGGTCTGGAAGGATAAATCACCCCTTTTGCCTTGTGATCCCTGTGAGCGTGCACATGCAAGGTTTTGGGCCGACTATGTTGACAAGAAGATCCATAGGTATGGGTTGAAGTTGTTGATGAGTAAGGGAGAAGAACAAGAAACAGCAAAGAAACATTGGATAGAGTGCTTCAAACTGTTAGAAGGAGAACTTGGAGAAAAACCTTACTTTGGGGGACAGAGTTTGGGTATAGTGGATGTGGGCCTTATACCCTTCTACTTATGGTTTAATACCCTTGAGACCCTAGCCAACTTCAGTATGGAGGCTGAGTGCCCTAAAATTGTGGGTTGGGGTAAGAGCTGCATGGGCAATGACAGTGTGTCCCAAACTCTACCGGACCTCCACAAGATCCATAAAATTCTTGTGGACTTTATGGGTTGA

Network for GWHGAAZE002531

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02798.21	GST_N	4	76	4.90E-19
PF13410.7	GST_C_2	124	185	2.70E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00799	GST, gst	Metabolic pathways	map01100
		Glutathione metabolism	map00480
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982
		Drug metabolism - other enzymes	map00983
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.052
	SRR3591706	second leaf	0.272
	SRR3591707	mature leaf	0.295
	SRR3591708	Shoot apex	0.315
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.957
	SRR3591711	White flower	0.774
	SRR3591712	Green floral bud	0.665
	SRR3591713	Yellow flower	2.768
SRP173429	SRR8316895	Juvenile bud stage	0.025
	SRR8316896	Juvenile bud stage	0.550
	SRR8316897	Juvenile bud stage	0.320
	SRR8316894	Third green stage	0.127
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.962
	SRR8316898	Complete white stage	1.642
	SRR8316899	Complete white stage	0.323
	SRR8316903	Complete white stage	2.923
	SRR8316902	Silver flowering stage	0.521
	SRR8316904	Silver flowering stage	2.508
	SRR8316905	Silver flowering stage	1.395
	SRR8316906	Gold flowering stage	45.470
	SRR8316907	Gold flowering stage	8.913
	SRR8316908	Gold flowering stage	14.829
SRP132670	SRR6706286	Control	1.271
	SRR6706287	Light intensity 50%	0.469
	SRR6706288	Light intensity 20%	0.368
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.032
	CNS0095593	Slightly white alabastrum(diploid) 2	0.050
	CNS0095594	Slightly white alabastrum(diploid) 3	0.073
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.109
	CNS0095597	Whole white alabastrum(diploid) 4	0.027
	CNS0095598	Silvery flower (diploied) 1	0.163
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.126
	CNS0095601	Golden flower (diploid) 1	2.813
	CNS0095602	Golden flower (diploid) 2	4.389
	CNS0095603	Golden flower (diploid) 3	3.050
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.079
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.069
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.112
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.283
	CNS0095614	Golden flower (tetraploid) 2	1.312
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.127
	CRR073299	Stem 3	0.023
	CRR073300	Leaf 1	0.018
	CRR073301	Leaf 2	0.071
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.465
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.300
	CRR073309	Second white 1	0.811
	CRR073310	Second white 2	3.101
	CRR073311	Second white 3	1.101
	CRR073312	Silver flowering 1	7.357
	CRR073313	Silver flowering 2	3.953
	CRR073314	Silver flowering 3	6.771
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.011
	CRR073317	Gold flowering 3	1.123
	CRR073318	Tawny withering 1	32.537
	CRR073319	Tawny withering 2	47.793
	CRR073320	Tawny withering 3	0.929