Gene detail

Detail information of GWHGAAZE002533

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009625756.1	3.73934E-84	PREDICTED: ubiquitin carboxyl-terminal hydrolase 25 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9FPS2\|UBP25_ARATH	5E-41	Ubiquitin carboxyl-terminal hydrolase 25
trEMBL	tr\|M1CN55\|M1CN55_SOLTU	1E-76	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT3G14400.1	8E-38	ubiquitin-specific protease 25

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	80718147	80719759	-
GWHAAZE00000001	mRNA	80718147	80719759	-
GWHAAZE00000001	exon	80718147	80719115	-
GWHAAZE00000001	exon	80719207	80719337	-
GWHAAZE00000001	exon	80719681	80719759	-
GWHAAZE00000001	CDS	80719681	80719759	-
GWHAAZE00000001	CDS	80719207	80719337	-
GWHAAZE00000001	CDS	80718147	80719115	-

Transcript Sequence
>GWHTAAZE002537 ATGCCTACAAGAATGAACATGGCTGGAGGCCGTTTCGCACTTCTGGGTGCCTTGTCGGAGACTTTTCGAGGTCATGGTGAGCATTGCTCTATTAACGATTTGATTGATCTTTGGCTGGTGCAGGATTTATATCCAGAGTACGATCTTTTTGCTACCATTGTGCATTCTGGCTTCTCGCCAGATTCTGGACACTATTATGCATACATCAAGGATGCTATGGGCCGTTGGTATTGCTGCAACGATTCTTATGTTTCACTTTCAACCCTGCAGGAGGTATTGTCGGAGAAGGTTTATATCCTTTTCTTTTCTCGTACCAAACAGAGACCAGTACCTGCCAATACTGCTATGGCTACCAATGGAACAAAGTCGTGTATTTCCAATGGCAGTGATACATCCAGAATCACAAAGGCAGTTCATCCATTAAACTCGGTTAGTACTACACAGTTTGTTAACCATCCTTCTGAGAAGGATAATTCGCCCACTTCTAAGGTTGATACAGTGACATCAACTCCAAAGATCAAGTTAGGAAGCTTTGGTATTGCTGGTATGAAAAAGCCTCCTTCAAATGGCAGCGTAAAAATCGTTGTTCATAAAAGAGAATCTAGCGAAAATAATGGAGATGTAAAAGCCTTGAATGGTACGGAGAAAAGTGAGAGCAAAATGGCGTCATTAAAGGATTGCAATGGTGTTTGCAAAACTAAACCAGTTGATGGTGAAAAAACCCAGTCACGTCCCTTTGCATATGGGAATGGTAAAAATCAAGGCATCAAGGTCAATTCATTAGTGACAGATTGCTATGAGAATAATGGTACAAGAAACACAATGGCGTCGTCAAGAGGTCCCAACCACCAGGAATTGCAAAATGGTAAAAGCCAGAGCTTGAAGGTCAATTCCTTAGTAACAGAGCGGTATGAGAACAATGGTACTAGAAACACAATGGCATCGGGAAGAGGTCCCAACTACCAGGAATTGCAAAATGGTAGTGTTAATTGCCTCTCTGGTAACTCTGGCTCCAAAAGAAAATTAGGGCAAGAGGATTCGTCCATTTTGTTGGCCGAAGATGCTCAATCTCGTGCAAAAGTTGAAGAATTGAAAGAAAAGTATGTTATCCCTTTAGCTCTGGTCCTTCCTCCTTTTTTTTTTTTTTTGACTTATGGTTTATTGAAATCTAGTCAATGA

Network for GWHGAAZE002533

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.30	UCH	45	102	6.00E-14

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0016579	biological_process	protein deubiquitination
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.117
	SRR3591706	second leaf	5.560
	SRR3591707	mature leaf	4.855
	SRR3591708	Shoot apex	6.519
	SRR3591709	Stem	6.579
	SRR3591710	White floral bud	8.885
	SRR3591711	White flower	7.724
	SRR3591712	Green floral bud	8.691
	SRR3591713	Yellow flower	7.629
SRP173429	SRR8316895	Juvenile bud stage	8.821
	SRR8316896	Juvenile bud stage	11.297
	SRR8316897	Juvenile bud stage	4.743
	SRR8316894	Third green stage	4.924
	SRR8316900	Third green stage	12.137
	SRR8316901	Third green stage	10.660
	SRR8316898	Complete white stage	3.533
	SRR8316899	Complete white stage	14.605
	SRR8316903	Complete white stage	5.654
	SRR8316902	Silver flowering stage	6.180
	SRR8316904	Silver flowering stage	7.416
	SRR8316905	Silver flowering stage	3.069
	SRR8316906	Gold flowering stage	9.628
	SRR8316907	Gold flowering stage	8.732
	SRR8316908	Gold flowering stage	9.345
SRP132670	SRR6706286	Control	2.083
	SRR6706287	Light intensity 50%	3.304
	SRR6706288	Light intensity 20%	3.195
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.009
	CNS0095593	Slightly white alabastrum(diploid) 2	6.462
	CNS0095594	Slightly white alabastrum(diploid) 3	8.839
	CNS0095595	Whole white alabastrum(diploid) 2	8.186
	CNS0095596	Whole white alabastrum(diploid) 3	9.936
	CNS0095597	Whole white alabastrum(diploid) 4	9.056
	CNS0095598	Silvery flower (diploied) 1	11.180
	CNS0095599	Silvery flower (diploied) 2	6.513
	CNS0095600	Silvery flower (diploied) 3	9.613
	CNS0095601	Golden flower (diploid) 1	7.163
	CNS0095602	Golden flower (diploid) 2	12.304
	CNS0095603	Golden flower (diploid) 3	11.755
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.252
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.248
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.654
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.164
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.118
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.720
	CNS0095610	Silvery flower (tetraploid) 1	7.930
	CNS0095611	Silvery flower (tetraploid) 2	8.636
	CNS0095612	Silvery flower (tetraploid) 3	7.158
	CNS0095613	Golden flower (tetraploid) 1	5.392
	CNS0095614	Golden flower (tetraploid) 2	9.267
	CNS0095615	Golden flower (tetraploid) 3	5.438
CRA001975	CRR073297	Stem 1	11.536
	CRR073298	Stem 2	7.525
	CRR073299	Stem 3	6.258
	CRR073300	Leaf 1	7.212
	CRR073301	Leaf 2	5.255
	CRR073302	Leaf 3	4.390
	CRR073303	Juvenile bud 1	5.206
	CRR073304	Juvenile bud 2	3.289
	CRR073305	Juvenile bud 3	5.161
	CRR073306	Third green 1	2.746
	CRR073307	Third green 2	1.430
	CRR073308	Third green 3	2.284
	CRR073309	Second white 1	1.924
	CRR073310	Second white 2	3.530
	CRR073311	Second white 3	3.635
	CRR073312	Silver flowering 1	2.302
	CRR073313	Silver flowering 2	1.963
	CRR073314	Silver flowering 3	2.435
	CRR073315	Gold flowering 1	3.956
	CRR073316	Gold flowering 2	8.274
	CRR073317	Gold flowering 3	2.744
	CRR073318	Tawny withering 1	7.570
	CRR073319	Tawny withering 2	11.349
	CRR073320	Tawny withering 3	8.826