Gene detail

Detail information of GWHGAAZE002534

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO50487.1	4.7223E-116	hypothetical protein CISIN_1g006181mg [Citrus sinensis]
Swissprot	tr\|Q9FPS2\|UBP25_ARATH	4E-105	Ubiquitin carboxyl-terminal hydrolase 25
trEMBL	tr\|M1CN55\|M1CN55_SOLTU	6E-117	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT3G14400.1	2E-80	ubiquitin-specific protease 25

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	80721822	80723746	-
GWHAAZE00000001	mRNA	80721822	80723746	-
GWHAAZE00000001	exon	80721822	80721944	-
GWHAAZE00000001	exon	80722334	80722409	-
GWHAAZE00000001	exon	80722498	80723014	-
GWHAAZE00000001	exon	80723695	80723746	-
GWHAAZE00000001	CDS	80723695	80723746	-
GWHAAZE00000001	CDS	80722498	80723014	-
GWHAAZE00000001	CDS	80722334	80722409	-
GWHAAZE00000001	CDS	80721822	80721944	-

Transcript Sequence
>GWHTAAZE002538 ATGCGATCCTCTTGGTGGCGGTGGGGGAATGTGGCGGAATCGGAAGAGGAAGGTGATTCGGCTGCGGAACGGGACAGGAAGAGTGATTGTCCGTTTTGTATAATAGAGAAGCGAATATCACGGTCTTTAAGTACTGATCTACTCCTAGATGCACCTGCGAGGATCAATAGCTGCTTGAAGATTTTTGCCGAGCACTTCAGGTTTGGCAGGCAAGAGGATGCGCATGAGTTTCTTCGATATGTCATCGATGCGTGCCACAATACATGTCTCCGTCTCAAGAAATTGCAGCAACAGCAGCAACAGCAGAGACGAAAGGTCATCAATGGAGGAGGAGGAGGAGGAGGAGGCGGTGGTGAGGGTTCCAGTGGCGTTACTGTAGTTAAGGAGATATTTGGGGGTGCTTTGCAGAGCCAGGTGAAGTGCCTTTCGTGTAATGCGGAATCAAATAAGGTGGATGAGATCATGGATATAAGCCTTGATATACTGAACAGTCCTTCTCTGAAAGAAGCTTTGCAGAAGTTTTTTCAGCCCGAGGTTCTGGATGGCAACAATAAATACAAGTGTGACAATTGTAAGAAATTGGTGGCAGCAAGGAAGCAAATGTCAATTCTTCAAGCACCGAATGTCCTTGTAATCCAACTTAAGAGGTTTGAGGGCATATACGGTGGGAAGATTGACAGGGCCATTGCTTTTGAGGACGTTTTGGTACTTTCCAGTTACATGTGCAAGGCAAACAAGGTTGGTGGTGCTTCTATGAGTGGAATTTAA

Network for GWHGAAZE002534

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.30	UCH	51	246	1.40E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016579	biological_process	protein deubiquitination
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.160
	SRR3591706	second leaf	7.202
	SRR3591707	mature leaf	5.812
	SRR3591708	Shoot apex	6.236
	SRR3591709	Stem	7.972
	SRR3591710	White floral bud	9.246
	SRR3591711	White flower	10.544
	SRR3591712	Green floral bud	9.571
	SRR3591713	Yellow flower	7.325
SRP173429	SRR8316895	Juvenile bud stage	5.093
	SRR8316896	Juvenile bud stage	9.919
	SRR8316897	Juvenile bud stage	4.798
	SRR8316894	Third green stage	2.362
	SRR8316900	Third green stage	10.268
	SRR8316901	Third green stage	8.377
	SRR8316898	Complete white stage	3.572
	SRR8316899	Complete white stage	9.988
	SRR8316903	Complete white stage	3.791
	SRR8316902	Silver flowering stage	3.360
	SRR8316904	Silver flowering stage	5.294
	SRR8316905	Silver flowering stage	2.576
	SRR8316906	Gold flowering stage	9.960
	SRR8316907	Gold flowering stage	11.006
	SRR8316908	Gold flowering stage	15.238
SRP132670	SRR6706286	Control	4.224
	SRR6706287	Light intensity 50%	5.489
	SRR6706288	Light intensity 20%	5.759
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.373
	CNS0095593	Slightly white alabastrum(diploid) 2	6.735
	CNS0095594	Slightly white alabastrum(diploid) 3	5.583
	CNS0095595	Whole white alabastrum(diploid) 2	6.117
	CNS0095596	Whole white alabastrum(diploid) 3	6.519
	CNS0095597	Whole white alabastrum(diploid) 4	5.518
	CNS0095598	Silvery flower (diploied) 1	7.852
	CNS0095599	Silvery flower (diploied) 2	6.401
	CNS0095600	Silvery flower (diploied) 3	7.801
	CNS0095601	Golden flower (diploid) 1	8.290
	CNS0095602	Golden flower (diploid) 2	8.715
	CNS0095603	Golden flower (diploid) 3	8.250
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.544
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.018
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.513
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.139
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.868
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.671
	CNS0095610	Silvery flower (tetraploid) 1	8.013
	CNS0095611	Silvery flower (tetraploid) 2	9.625
	CNS0095612	Silvery flower (tetraploid) 3	7.159
	CNS0095613	Golden flower (tetraploid) 1	5.953
	CNS0095614	Golden flower (tetraploid) 2	10.092
	CNS0095615	Golden flower (tetraploid) 3	4.726
CRA001975	CRR073297	Stem 1	9.485
	CRR073298	Stem 2	6.768
	CRR073299	Stem 3	6.183
	CRR073300	Leaf 1	5.638
	CRR073301	Leaf 2	6.880
	CRR073302	Leaf 3	4.446
	CRR073303	Juvenile bud 1	4.006
	CRR073304	Juvenile bud 2	3.021
	CRR073305	Juvenile bud 3	4.177
	CRR073306	Third green 1	2.500
	CRR073307	Third green 2	0.882
	CRR073308	Third green 3	2.016
	CRR073309	Second white 1	1.612
	CRR073310	Second white 2	3.126
	CRR073311	Second white 3	2.757
	CRR073312	Silver flowering 1	2.497
	CRR073313	Silver flowering 2	1.069
	CRR073314	Silver flowering 3	1.667
	CRR073315	Gold flowering 1	2.891
	CRR073316	Gold flowering 2	4.120
	CRR073317	Gold flowering 3	3.399
	CRR073318	Tawny withering 1	3.202
	CRR073319	Tawny withering 2	6.189
	CRR073320	Tawny withering 3	5.250