Gene detail

Detail information of GWHGAAZE002537

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009354832.1	0	PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase-like isoform X1 [Pyrus x bretschneideri]
COG	YP_003890366.1	2E-119	FMN-dependent alpha-hydroxy acid dehydrogenase
Swissprot	tr\|Q9LRR9\|GLO1_ARATH	0	Peroxisomal (S)-2-hydroxy-acid oxidase GLO1
trEMBL	tr\|D7EZN6\|D7EZN6_9ASTR	0	Glycolate oxidase {ECO:0000313\|EMBL:ACD93720.1}
TAIR10	AT3G14420.2	0	Aldolase-type TIM barrel family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	80837748	80842784	+
GWHAAZE00000001	mRNA	80837748	80842784	+
GWHAAZE00000001	exon	80837748	80838086	+
GWHAAZE00000001	exon	80838578	80838751	+
GWHAAZE00000001	exon	80838839	80838963	+
GWHAAZE00000001	exon	80839372	80839418	+
GWHAAZE00000001	exon	80840011	80840088	+
GWHAAZE00000001	exon	80840208	80840332	+
GWHAAZE00000001	exon	80840962	80841028	+
GWHAAZE00000001	exon	80841105	80841167	+
GWHAAZE00000001	exon	80841533	80841602	+
GWHAAZE00000001	exon	80841860	80841960	+
GWHAAZE00000001	exon	80842079	80842183	+
GWHAAZE00000001	exon	80842590	80842784	+
GWHAAZE00000001	five_prime_UTR	80837748	80838086	+
GWHAAZE00000001	five_prime_UTR	80838578	80838614	+
GWHAAZE00000001	CDS	80838615	80838751	+
GWHAAZE00000001	CDS	80838839	80838963	+
GWHAAZE00000001	CDS	80839372	80839418	+
GWHAAZE00000001	CDS	80840011	80840088	+
GWHAAZE00000001	CDS	80840208	80840332	+
GWHAAZE00000001	CDS	80840962	80841028	+
GWHAAZE00000001	CDS	80841105	80841167	+
GWHAAZE00000001	CDS	80841533	80841602	+
GWHAAZE00000001	CDS	80841860	80841960	+
GWHAAZE00000001	CDS	80842079	80842183	+
GWHAAZE00000001	CDS	80842590	80842784	+

Transcript Sequence
>GWHTAAZE002541 TTGGAATTGTGTCATAAGATTCAAGAGGGTGGTGATCCAATGATGTATTGGCACAATTCGATTGGAAGGATGACAGTGAGGGAAGGCTAGCTATGAAACACATAGTGGTCAAGTGGAGGAGAGCCACTCATTTACCCACCCTCATTGGATTTGGTTTCAAATTTGCACCTCCCATATACCTCATCCAAATCCCTTCTCTCTCTCCCTCCATGGCCCCCACTCATTTTGTCCTGTTTTTACCATACACTCTCTGTCTCTAACAAGCTCCTCCTTTATGTTTTGGCTCATTTTCTTCCCTCCCTCTGCATGCAACATTTCCAGTTGCCTTTGGAGCCCAAGATCAACTAAGAAGAAGTTTCAAGAATAAAGAACAAAAATGGAGGTAACCAACGTGACCGAGTATCAGGCTATTGCCAAGGAAAAGTTGCCCAAGATGGTGTATGACTACTATGCATCTGGTGCAGAGGATCAATGGACTCTCCAAGAGAATAGAAATGCTTTCTCGAGGATTCTGTTTCGACCCCGTATTCTTATTGATGTGACCAAGATAGACATGAGCACCACCGTGTTGGGCTTCAAGATATCGATGCCCATCATGATTGCCCCAACAGCCATGCAAAAAATGGCTCATCCCGAAGGAGAGTATGCAACAGCAAGAGCCGCATCTGCAGCTGGAACTATTATGACATTGTCATCATGGGCCACATCTAGTGTTGAAGAGGTTGCTTCAACTGGACCTGGCATCCGCTTTTTTCAGCTTTACGTGTACAAGGACAGGAATGTTGTTGCTCAGCTTGTGAGAAGAGCTGAAAGAGCTGGCTTCAAGGCTATAGCTCTTACAGTTGATACTCCAAGGCTGGGTCGCAGAGAAGCTGATATCAAGAACAGATTTACTTTACCTCCGTTTTTGACATTGAAGAACTTTGAGGGTTTGGACCTTGGCAAGATGGATCAAGCAGCTGACTCTGGATTAGCTTCTTATGTTGCTGGCCAAATCGACCGTTCTCTGAGCTGGAAGGATGTGAAGTGGCTTCAGACAATTACAAGCATGCCAATCCTAGTGAAGGGTGTACTCACAGCTGAAGACACAAGGCTAGCTATACAAGCTGGAGCAGCTGGTATTATAGTATCCAATCACGGTGCTCGCCAACTTGATTATGTCCCTGCCACTATCACGGCCCTCGAAGAGGTTGTAAAAGCTGCACAAGGCCGTGTGCCCGTGTTCTTGGATGGTGGGGTCCGTCGTGGAACAGATGTCTTCAAAGCATTGGCCCTCGGAGCATCCGGAATTTTTATTGGACGACCGGTGGTGTTTTCATTGGCGGCTGAAGGAGAAGCCGGTGTCAGGAAAGTACTTCAAATGCTACGTGATGAGTTTGAGTTGACTATGGCATTAAGTGGTTGCCGATCACTCAAGGAAATCACCCGCAATCACATTGCCACTGATTGGGACGCCCCTCTCCCTCTCCTCCCTTCACCCAAGCTATAG

Network for GWHGAAZE002537

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01070.19	FMN_dh	13	355	1.00E-137

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11517	HAO	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0010181	molecular_function	FMN binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	103.043
	SRR3591706	second leaf	461.575
	SRR3591707	mature leaf	807.909
	SRR3591708	Shoot apex	175.857
	SRR3591709	Stem	98.605
	SRR3591710	White floral bud	9.135
	SRR3591711	White flower	16.655
	SRR3591712	Green floral bud	4.222
	SRR3591713	Yellow flower	3.852
SRP173429	SRR8316895	Juvenile bud stage	73.137
	SRR8316896	Juvenile bud stage	70.202
	SRR8316897	Juvenile bud stage	49.024
	SRR8316894	Third green stage	22.550
	SRR8316900	Third green stage	38.303
	SRR8316901	Third green stage	34.342
	SRR8316898	Complete white stage	5.895
	SRR8316899	Complete white stage	23.464
	SRR8316903	Complete white stage	15.765
	SRR8316902	Silver flowering stage	3.286
	SRR8316904	Silver flowering stage	4.975
	SRR8316905	Silver flowering stage	1.425
	SRR8316906	Gold flowering stage	4.369
	SRR8316907	Gold flowering stage	4.721
	SRR8316908	Gold flowering stage	4.568
SRP132670	SRR6706286	Control	63.743
	SRR6706287	Light intensity 50%	48.984
	SRR6706288	Light intensity 20%	50.459
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	49.105
	CNS0095593	Slightly white alabastrum(diploid) 2	24.395
	CNS0095594	Slightly white alabastrum(diploid) 3	42.942
	CNS0095595	Whole white alabastrum(diploid) 2	21.974
	CNS0095596	Whole white alabastrum(diploid) 3	26.132
	CNS0095597	Whole white alabastrum(diploid) 4	20.604
	CNS0095598	Silvery flower (diploied) 1	118.192
	CNS0095599	Silvery flower (diploied) 2	105.596
	CNS0095600	Silvery flower (diploied) 3	33.965
	CNS0095601	Golden flower (diploid) 1	139.783
	CNS0095602	Golden flower (diploid) 2	86.058
	CNS0095603	Golden flower (diploid) 3	77.647
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.113
	CNS0095605	Slightly white alabastrum(tetraploid) 2	45.138
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.095
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.181
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.253
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.387
	CNS0095610	Silvery flower (tetraploid) 1	22.020
	CNS0095611	Silvery flower (tetraploid) 2	39.677
	CNS0095612	Silvery flower (tetraploid) 3	16.642
	CNS0095613	Golden flower (tetraploid) 1	11.854
	CNS0095614	Golden flower (tetraploid) 2	17.747
	CNS0095615	Golden flower (tetraploid) 3	7.800
CRA001975	CRR073297	Stem 1	120.656
	CRR073298	Stem 2	88.429
	CRR073299	Stem 3	146.770
	CRR073300	Leaf 1	14.955
	CRR073301	Leaf 2	24.708
	CRR073302	Leaf 3	23.361
	CRR073303	Juvenile bud 1	16.914
	CRR073304	Juvenile bud 2	9.259
	CRR073305	Juvenile bud 3	27.034
	CRR073306	Third green 1	2.311
	CRR073307	Third green 2	2.964
	CRR073308	Third green 3	5.895
	CRR073309	Second white 1	8.089
	CRR073310	Second white 2	3.732
	CRR073311	Second white 3	2.323
	CRR073312	Silver flowering 1	3.376
	CRR073313	Silver flowering 2	6.478
	CRR073314	Silver flowering 3	4.684
	CRR073315	Gold flowering 1	770.976
	CRR073316	Gold flowering 2	829.343
	CRR073317	Gold flowering 3	728.838
	CRR073318	Tawny withering 1	104.021
	CRR073319	Tawny withering 2	104.411
	CRR073320	Tawny withering 3	61.433