Detail information of GWHGAAZE002541


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009615476.10PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like [Nicotiana tomentosiformis]
COGYP_001866345.13E-93carotenoid oxygenase
Swissprottr|Q9M6E8|NCED1_PHAVU09-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic (Precursor)
trEMBLtr|R9S0Q3|R9S0Q3_SCUBA09-cis epoxycarotenoid dioxygenase {ECO:0000313|EMBL:AGN03861.1}
TAIR10AT3G14440.10nine-cis-epoxycarotenoid dioxygenase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8090980280911337-
GWHAAZE00000001mRNA8090980280911337-
GWHAAZE00000001exon8090980280911337-
GWHAAZE00000001CDS8090980280911337-
Transcript Sequence

Network for GWHGAAZE002541

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03055.16RPE65425024.30E-117
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K09840NCED Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf72.820
SRR3591706second leaf35.565
SRR3591707mature leaf24.985
SRR3591708Shoot apex35.517
SRR3591709Stem114.087
SRR3591710White floral bud154.749
SRR3591711White flower194.269
SRR3591712Green floral bud38.520
SRR3591713Yellow flower114.498
SRP173429 SRR8316895Juvenile bud stage 22.033
SRR8316896Juvenile bud stage 2.580
SRR8316897Juvenile bud stage 6.509
SRR8316894Third green stage 4.367
SRR8316900Third green stage 5.667
SRR8316901Third green stage 5.860
SRR8316898Complete white stage 60.639
SRR8316899Complete white stage 36.215
SRR8316903Complete white stage 67.567
SRR8316902Silver flowering stage45.928
SRR8316904Silver flowering stage78.476
SRR8316905Silver flowering stage24.301
SRR8316906Gold flowering stage 52.821
SRR8316907Gold flowering stage 64.975
SRR8316908Gold flowering stage 82.759
SRP132670SRR6706286Control5.939
SRR6706287Light intensity 50%7.719
SRR6706288Light intensity 20%4.580
CNP0000432CNS0095592Slightly white alabastrum(diploid) 131.707
CNS0095593Slightly white alabastrum(diploid) 223.738
CNS0095594Slightly white alabastrum(diploid) 319.850
CNS0095595Whole white alabastrum(diploid) 218.697
CNS0095596Whole white alabastrum(diploid) 32.852
CNS0095597Whole white alabastrum(diploid) 412.502
CNS0095598Silvery flower (diploied) 191.708
CNS0095599Silvery flower (diploied) 275.242
CNS0095600Silvery flower (diploied) 363.146
CNS0095601Golden flower (diploid) 160.124
CNS0095602Golden flower (diploid) 279.714
CNS0095603Golden flower (diploid) 377.176
CNS0095604Slightly white alabastrum(tetraploid) 12.492
CNS0095605Slightly white alabastrum(tetraploid) 21.168
CNS0095606Slightly white alabastrum(tetraploid) 36.596
CNS0095607Whole white alabastrum(tetraploid) 14.162
CNS0095608Whole white alabastrum(tetraploid) 22.478
CNS0095609Whole white alabastrum(tetraploid) 31.842
CNS0095610Silvery flower (tetraploid) 1105.467
CNS0095611Silvery flower (tetraploid) 226.837
CNS0095612Silvery flower (tetraploid) 323.864
CNS0095613Golden flower (tetraploid) 119.006
CNS0095614Golden flower (tetraploid) 243.812
CNS0095615Golden flower (tetraploid) 367.520
CRA001975CRR073297Stem 152.893
CRR073298Stem 246.578
CRR073299Stem 384.854
CRR073300Leaf 150.616
CRR073301Leaf 265.807
CRR073302Leaf 324.116
CRR073303Juvenile bud 159.104
CRR073304Juvenile bud 268.454
CRR073305Juvenile bud 363.947
CRR073306Third green 1340.715
CRR073307Third green 2211.921
CRR073308Third green 3244.085
CRR073309Second white 1133.927
CRR073310Second white 2124.858
CRR073311Second white 366.686
CRR073312Silver flowering 1255.704
CRR073313Silver flowering 2589.871
CRR073314Silver flowering 3660.324
CRR073315Gold flowering 11.743
CRR073316Gold flowering 25.996
CRR073317Gold flowering 36.100
CRR073318Tawny withering 116.072
CRR073319Tawny withering 263.290
CRR073320Tawny withering 315.184